Non-Coding RNA Search

Ss1.1-Pig4-TMW8056N21.3

Sequence:


               
               GGAGAAATTATATATGTATATATATTTATACAATTTATGTATACATATATATATGTATAC
ACACAGACACAAGACACATACCACCACCACCAACAACCACTACACCACACATGCTTGTAA
CAGGCACTAGAATAAAGAGGGACAACAAAACACACAGCCAGAGCAGCAAGCCTTAGCATT
AAGAATATACAGTATGCCGGAATTTGGGGTTCGTGCCTCCTAGCCTAGGAAACTTAAAAG
AAATATCCTTTTGACACAAAACGCAAAATGTTTTCCAAAACAATTGACATATGATACATT
ACGCCTTTGCAGTGAGCTAATAATAAGCTAACCTTTGTGCACAAATAACATTATATATAT
TATATATCTATTCTGCATAGGTATTTTGACTTTGTGCAGGACAGAAAGTTGTGTAGGTAT
GACTGTTCTACTTTTCAGTTTTTCTTTCTTTTTTTTAAATATATTTTATTTTCTCTAGAA
TTACTCAAAACAAAAGCAGCCTTCTATCTTGCCTTGTCTTAATGCTTTAAAATAACCAAA
CTGGAGATCTAACTACCAAACTGTTCATTATATTATTAAATACCAACTTTGGTTACAGTA
TAGTGTCTTTCCTTTAGCTGATGGTTCTGTAACCTTGTGCTTTTTAAAGCAATTTTTATG
TTTTGGTGCAAAAGTTGTCCAGTGTCTCTTGTTCCCTTCATTAGAGAACATGCTAGAGGT
ATGTTTGTAGGTATTTTTGTTTAGAAGAACTATTTCATGTGCTCCATTTTATTTATTATA
ATAGGTAAAAAGAAAAAAAAAAGGTTGTACTTCATCACTCATGTAAACATGCTCATGAAG
TTGAAAGTAATTAAGATTTGATACACTGATATCAATTTATTTATGTAACTAAAATCACTG
TTTTATAAACTTGTTAATGATCAACAATTTTTGTTTTGATTAAAATTAGTTTTTTGAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGAAATTATATATGTATATATATTTATACAATTTATGTATACATATATATATGTATAC
ACACAGACACAAGACACATACCACCACCACCAACAACCACTACACCACACATGCTTGTAA
CAGGCACTAGAATAAAGAGGGACAACAAAACACACAGCCAGAGCAGCAAGCCTTAGCATT
AAGAATATACAGTATGCCGGAATTTGGGGTTCGTGCCTCCTAGCCTAGGAAACTTAAAAG
AAATATCCTTTTGACACAAAACGCAAAATGTTTTCCAAAACAATTGACATATGATACATT
ACGCCTTTGCAGTGAGCTAATAATAAGCTAACCTTTGTGCACAAATAACATTATATATAT
TATATATCTATTCTGCATAGGTATTTTGACTTTGTGCAGGACAGAAAGTTGTGTAGGTAT
GACTGTTCTACTTTTCAGTTTTTCTTTCTTTTTTTTAAATATATTTTATTTTCTCTAGAA
TTACTCAAAACAAAAGCAGCCTTCTATCTTGCCTTGTCTTAATGCTTTAAAATAACCAAA
CTGGAGATCTAACTACCAAACTGTTCATTATATTATTAAATACCAACTTTGGTTACAGTA
TAGTGTCTTTCCTTTAGCTGATGGTTCTGTAACCTTGTGCTTTTTAAAGCAATTTTTATG
TTTTGGTGCAAAAGTTGTCCAGTGTCTCTTGTTCCCTTCATTAGAGAACATGCTAGAGGT
ATGTTTGTAGGTATTTTTGTTTAGAAGAACTATTTCATGTGCTCCATTTTATTTATTATA
ATAGGTAAAAAGAAAAAAAAAAGGTTGTACTTCATCACTCATGTAAACATGCTCATGAAG
TTGAAAGTAATTAAGATTTGATACACTGATATCAATTTATTTATGTAACTAAAATCACTG
TTTTATAAACTTGTTAATGATCAACAATTTTTGTTTTGATTAAAATTAGTTTTTTGAAAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-119, + strand, RNAz p=0.997408
               

               
               359-477, - strand, RNAz p=0.722869

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.997408
               

               
               359-477, - strand, RNAz p=0.722869

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               8-100, - strand, RNAmicro p=0.979925

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               8-100, - strand, RNAmicro p=0.979925

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-960, gnl|bosTau2|chr20 (9961940-9960994)
               

               
               1-960, gnl|Hg17|chr5 (60876803-60877752)
               

               
               1-960, gnl|Mm7|chr13 (104854838-104853928)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-960, gnl|bosTau2|chr20 (9961940-9960994)
               

               
               1-960, gnl|Hg17|chr5 (60876803-60877752)
               

               
               1-960, gnl|Mm7|chr13 (104854838-104853928)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               lin (0.582411)
               

               
               fco (0.314416)
               

               
               liv (0.292569)
               

               
               ret (0.257467)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               tra (0.123092)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.582411)
               

               
               fco (0.314416)
               

               
               liv (0.292569)
               

               
               ret (0.257467)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               tra (0.123092)

	1-119, + strand, RNAz p=0.997408
	359-477, - strand, RNAz p=0.722869

	1-960, gnl\|bosTau2\|chr20 (9961940-9960994)
	1-960, gnl\|Hg17\|chr5 (60876803-60877752)
	1-960, gnl\|Mm7\|chr13 (104854838-104853928)

	lin (0.582411)
	fco (0.314416)
	liv (0.292569)
	ret (0.257467)
	hyp (0.142837)
	lnt (0.142308)
	tra (0.123092)