Non-Coding RNA Search

Ss1.1-Pig4-TMW8056N24.5

Sequence:


               
               TTCCGAGTTCTTTTGTTGGTTCCACAAAAAGTGAAACTGCGAAATCAAGATCGAGTAGGT
GTTTGGCGGCAGGCTTTTAAAGTTTTTATTTTATTTTATCCTTTCGCAGACAAATTATAA
GGAAAGCAACTGCCTGGCAGACCCTGCTCCCACCCAGGCAGCGCCCCCACCCCTCGGGGC
CTCAGGGAACATCCTAGGAGAAATTCTCCGGATTTGGGACCAGACCCCATCTAGAACCAA
GACCCAGTCTCGGTCCTCCGTGAGGCGGGAAGACACTAAAACGGAAGCATCTCGCCAAGC
GCTTTGATGGTGGGAATCCAGCAAACACCAGAAATAAAAGTTCGCCACGTCTTCAGGGGG
TGCTGACGCCCGGCTGAGCTGCAAATGGTGTCTCGGCCCCTGAAGACTTGTGAAGAGAAT
GCTGAGCAGAGGGAACAGCAGAAGAGAAAGGACGTTCGCTAGGGAATCCGAGCATTTTCC
TTGAAGCTCCCATCGAAAGGTTTTGATCAGGCTGGATTTTCTATTTTTAGCAAGTCCTAT
TACCCTGGCCTGCAGTGTCCTGAACGAACCAATGTGGACAAAAACCTGCTGCCTGCCATT
TCAGTGAACTATCCTTGCTGCCTACAATTCCAGTAAACAAGGAAGGCTGCCCACCATCCA
GCCATCAGCCGCCACAGCTTCCCTGTTGGTGTGCCCTTAGGGGAATTCAGGATGGAGAAA
AACAGGATACTGGCCTTAGATAGTTAAGATGCATGCCAAAGGAATAATTTCAATGAGTCC
AGAGCCTTGCATCTTCCCATACCTAGAAAGGCACTAAAATAATTAACTTGAGATATCTAT
CTTTTGTGATTAGCAGTCATCTTTTGATGTGTCACTACATTTGTTTTGTTTTGTTTTTTC
CTTAGCAAAAACTCCTAATATATCCTGGCTCCTCTTTTATCTCTTTGAAACAGTGCCTCA
GAGCTATCTGAGAGGCTGATTTCTAGGCTATCAACCGTGGAAAGTCCCTGAATAAAACAC
AACTCTCAATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCGAGTTCTTTTGTTGGTTCCACAAAAAGTGAAACTGCGAAATCAAGATCGAGTAGGT
GTTTGGCGGCAGGCTTTTAAAGTTTTTATTTTATTTTATCCTTTCGCAGACAAATTATAA
GGAAAGCAACTGCCTGGCAGACCCTGCTCCCACCCAGGCAGCGCCCCCACCCCTCGGGGC
CTCAGGGAACATCCTAGGAGAAATTCTCCGGATTTGGGACCAGACCCCATCTAGAACCAA
GACCCAGTCTCGGTCCTCCGTGAGGCGGGAAGACACTAAAACGGAAGCATCTCGCCAAGC
GCTTTGATGGTGGGAATCCAGCAAACACCAGAAATAAAAGTTCGCCACGTCTTCAGGGGG
TGCTGACGCCCGGCTGAGCTGCAAATGGTGTCTCGGCCCCTGAAGACTTGTGAAGAGAAT
GCTGAGCAGAGGGAACAGCAGAAGAGAAAGGACGTTCGCTAGGGAATCCGAGCATTTTCC
TTGAAGCTCCCATCGAAAGGTTTTGATCAGGCTGGATTTTCTATTTTTAGCAAGTCCTAT
TACCCTGGCCTGCAGTGTCCTGAACGAACCAATGTGGACAAAAACCTGCTGCCTGCCATT
TCAGTGAACTATCCTTGCTGCCTACAATTCCAGTAAACAAGGAAGGCTGCCCACCATCCA
GCCATCAGCCGCCACAGCTTCCCTGTTGGTGTGCCCTTAGGGGAATTCAGGATGGAGAAA
AACAGGATACTGGCCTTAGATAGTTAAGATGCATGCCAAAGGAATAATTTCAATGAGTCC
AGAGCCTTGCATCTTCCCATACCTAGAAAGGCACTAAAATAATTAACTTGAGATATCTAT
CTTTTGTGATTAGCAGTCATCTTTTGATGTGTCACTACATTTGTTTTGTTTTGTTTTTTC
CTTAGCAAAAACTCCTAATATATCCTGGCTCCTCTTTTATCTCTTTGAAACAGTGCCTCA
GAGCTATCTGAGAGGCTGATTTCTAGGCTATCAACCGTGGAAAGTCCCTGAATAAAACAC
AACTCTCAATTT

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               616-896, gnl|bosTau2|chr1 (82423033-82422756)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               616-896, gnl|bosTau2|chr1 (82423033-82422756)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               ova (0.258264)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.258264)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)