Ss1.1-Pig4-TMW8056O05.5
|
GACCCGGCTGGTCGCCGCTGCAGGAAGATGGCGGAGCTGCGCGCGCTTGTAGCTGTCAAG
AGAGTCATCGACTTCGCCGTGAAGATCCGAGTGAAGCCCGACAGGACAGGGGTGGTCATG
GATGGCGTGAAGCACTCCATGAACCCCTTCTGTGAGATCGCTGTGGAGGAGGCCGTGCGG
CTCAAGGAGAAGAAGCTGGTGAAGGAAGTCATTGCTGTCAGCTGCGGGCCTGCCCAGTGC
CAGGAGACCATTCGCACCGCTCTGGCCATGGGTGCAGACCGTGGCATCCATGTGGAGGTG
CCGGCTGCAGAGGCGCATCACCTGGGCCCCCTGCAGGTGGCCCGGGTCCTGGCCAAGCTG
GCCCAGAAGGAGAAGGTGGACCTGGTGCTGCTGGGAAAGCAGGCCATTGATGATGACTGT
AACCAGACAGGCCAGATGACAGCCGGATTTCTGGACTGGCCACAGGGCACATTCGCCTCC
CAGGTGACACTAGAAGGGGACAAGGTGAAAGTGGAGCGGGAGATCGACGGGGGCCTGGAG
ACCCTGCGCCTGAAGCTGCCTGCCGTGGTGACCGCTGACCTGCGGCTCAACGAGCCCCGC
TACGCCACGTTGCCCAACATCATGAAAGCCAAGAAGAAGAAGATTGAGGTGATCAAGGCT
GGAGACCTGGGCGTGGACCTGACCTCCAAACTCTCTGTGGTAAGCGTGGAGGACCCCCCC
CAGCGTGTGGCCGGCGTCAAGGTGGAGACCACGGAGGACCTGGTGGCCAAGCTGAGGGAG
ATTGGGCGCATTTGAGCCCCTTCCCTGAAACTCGGCAATAAAACCATGACTCTCCTGAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GACCCGGCTGGTCGCCGCTGCAGGAAGATGGCGGAGCTGCGCGCGCTTGTAGCTGTCAAG
AGAGTCATCGACTTCGCCGTGAAGATCCGAGTGAAGCCCGACAGGACAGGGGTGGTCATG
GATGGCGTGAAGCACTCCATGAACCCCTTCTGTGAGATCGCTGTGGAGGAGGCCGTGCGG
CTCAAGGAGAAGAAGCTGGTGAAGGAAGTCATTGCTGTCAGCTGCGGGCCTGCCCAGTGC
CAGGAGACCATTCGCACCGCTCTGGCCATGGGTGCAGACCGTGGCATCCATGTGGAGGTG
CCGGCTGCAGAGGCGCATCACCTGGGCCCCCTGCAGGTGGCCCGGGTCCTGGCCAAGCTG
GCCCAGAAGGAGAAGGTGGACCTGGTGCTGCTGGGAAAGCAGGCCATTGATGATGACTGT
AACCAGACAGGCCAGATGACAGCCGGATTTCTGGACTGGCCACAGGGCACATTCGCCTCC
CAGGTGACACTAGAAGGGGACAAGGTGAAAGTGGAGCGGGAGATCGACGGGGGCCTGGAG
ACCCTGCGCCTGAAGCTGCCTGCCGTGGTGACCGCTGACCTGCGGCTCAACGAGCCCCGC
TACGCCACGTTGCCCAACATCATGAAAGCCAAGAAGAAGAAGATTGAGGTGATCAAGGCT
GGAGACCTGGGCGTGGACCTGACCTCCAAACTCTCTGTGGTAAGCGTGGAGGACCCCCCC
CAGCGTGTGGCCGGCGTCAAGGTGGAGACCACGGAGGACCTGGTGGCCAAGCTGAGGGAG
ATTGGGCGCATTTGAGCCCCTTCCCTGAAACTCGGCAATAAAACCATGACTCTCCTGAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
241-403, gnl|bosTau2|chr18 (50742038-50741876) |
|
241-403, gnl|canFam2|chr1 (108501740-108501548) |
|
241-403, gnl|danRer3|chr9 (23861018-23860838) |
|
241-403, gnl|fr1|chrUn (271530387-271530566) |
|
241-403, gnl|hg17|chr19 (56548192-56548386) |
|
241-403, gnl|Hg17|chr19 (56548359-56548197) |
|
241-403, gnl|mm7|chr7 (39628535-39628354) |
|
241-403, gnl|Mm7|chr7 (39628366-39628528) |
|
241-403, gnl|monDom2|scaffold_212 (263899-264093) |
|
241-403, gnl|panTro1|chr20 (53964480-53964674) |
|
241-403, gnl|rheMac2|chr19 (57449428-57449620) |
|
241-403, gnl|rn3|chr1 (93907003-93906818) |
|
241-403, gnl|tetNig1|chrUn_random (22294540-22294719) |
|
241-403, gnl|xenTro1|scaffold_367 (439375-439570) |
| |
|
624-838, gnl|bosTau2|chr18 (50735946-50735732) |
|
624-838, gnl|Hg17|chr19 (56540448-56540241) |
|
624-838, gnl|Mm7|chr7 (39633139-39633352) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
241-403, gnl|bosTau2|chr18 (50742038-50741876) |
|
241-403, gnl|canFam2|chr1 (108501740-108501548) |
|
241-403, gnl|danRer3|chr9 (23861018-23860838) |
|
241-403, gnl|fr1|chrUn (271530387-271530566) |
|
241-403, gnl|hg17|chr19 (56548192-56548386) |
|
241-403, gnl|Hg17|chr19 (56548359-56548197) |
|
241-403, gnl|mm7|chr7 (39628535-39628354) |
|
241-403, gnl|Mm7|chr7 (39628366-39628528) |
|
241-403, gnl|monDom2|scaffold_212 (263899-264093) |
|
241-403, gnl|panTro1|chr20 (53964480-53964674) |
|
241-403, gnl|rheMac2|chr19 (57449428-57449620) |
|
241-403, gnl|rn3|chr1 (93907003-93906818) |
|
241-403, gnl|tetNig1|chrUn_random (22294540-22294719) |
|
241-403, gnl|xenTro1|scaffold_367 (439375-439570) |
| |
|
624-838, gnl|bosTau2|chr18 (50735946-50735732) |
|
624-838, gnl|Hg17|chr19 (56540448-56540241) |
|
624-838, gnl|Mm7|chr7 (39633139-39633352) |
|
ctl (0.612276) |
|
cli (0.611247) |
|
pty (0.570858) |
|
fce (0.543183) |
|
cje (0.495704) |
|
cki (0.495704) |
|
mas (0.42061) |
|
cst (0.420109) |
|
hlv (0.417769) |
|
fli (0.405762) |
|
cov (0.396458) |
|
jej (0.395687) |
|
mcp (0.341297) |
|
cag (0.302389) |
|
che (0.272628) |
|
nmm (0.265604) |
|
fcc (0.197785) |
|
col (0.195008) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
nco (0.161734) |
|
csp (0.161186) |
|
ski (0.146735) |
|
nca (0.136874) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
ese (0.126502) |
|
bla (0.124347) |
|
clu (0.119646) |
|
jca (0.11396) |
|
nbm (0.0993246) |
|
ctl (0.612276) |
|
cli (0.611247) |
|
pty (0.570858) |
|
fce (0.543183) |
|
cje (0.495704) |
|
cki (0.495704) |
|
mas (0.42061) |
|
cst (0.420109) |
|
hlv (0.417769) |
|
fli (0.405762) |
|
cov (0.396458) |
|
jej (0.395687) |
|
mcp (0.341297) |
|
cag (0.302389) |
|
che (0.272628) |
|
nmm (0.265604) |
|
fcc (0.197785) |
|
col (0.195008) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
nco (0.161734) |
|
csp (0.161186) |
|
ski (0.146735) |
|
nca (0.136874) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
ese (0.126502) |
|
bla (0.124347) |
|
clu (0.119646) |
|
jca (0.11396) |
|
nbm (0.0993246) |
