Ss1.1-Pig4-TMW8056O08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACACGCCGGTTGTGGCCTGGGGTGGGCCGGCTGTTTACTATAGGGACTATGCTGGGGCG AGGAAGACGAGCTTACAGCGCGTCCCTGGCCTTTGCAGAGGTTCTACGGCTGCCAAGCAA TCAACGCACGAAGCTCGTGTTCCCGCTGCAAGAACTCCAACGGTTTCTCGTCCCGGGCTC GAACCCAGACCTTCACCTGAAGATCTTCGACCCAACTCTGGACGACATCGCGAGGGCTGA GAGCATCTTCACGGCATCCGCCCGGAACCGCATCGATTACGTCAGCTCCGCTGTGCGTCT CGACCACGCCCCGGACCTCCGCTGCCCTGAGGTGTGTTTTATAGGTAGAAGCAATGTTGG AAAATCGTCTCTAATAAAGGCTTTATTTTCATTTGCTCCAGAGGTTGAGGTTAGAGTCTC CAAAAAACCGGGGCACACCAAGAAGATGAATTTTTTCAAAGTTGGAAGATATTTTACACT GGTGGATATGCCAGGTTATGGCTATAGAGCACCTGAAGATTTTGTCGACATGGTAGAAGA CTATCTAAAAGAACGGAGGAATTTGATGAGAACATTTTTGTTAGTGGATAGTGTTGTTGG AATTCAAAAAACAGACAATATTGCCATAGAGATGTGTGAAGAATTTGCATTACCTTATGT GATGGTATTAACAAAAATTGATAAATCTTCCAAGGGACGTCTTTTAAAACAAGTGCTTCA GATCCAGAAATTTGTTGACACTGAAACACAAGGGTGTTTTCCTCAGTTGTTTCCTGTAAG TGCTGTTACCTTTTCTGGAATCCATCTATTGAGATGCTTTATAGCAGATATAACAGGAAA TCTTAAGACTAGTGGCTTCCAGTTTAGCTGAAGATTCAAAATTCTCTATTTCAACTGAAG TTAAATACCTAGAATTTCAACATTGTTTTAAATGTTGTGTTTCTGTAACTTACATAAGGA TCACTTCAGCTTTAAAACCTGCATCTTCCCAAAGCAAGAATGAATTTGTGCCTGGTGGGG GAAAGGTTTAAAAATGATTGAATTATACCGTCCATTAGAATAGATACAAGATTTTTCTGT TTTAACAAACTGACAAGAACATATAGAAGAAGTCCATAAAATGAAAACCTGTTTGTTTCC TACTGTGTAGACAACGGTTTGCTATATTATTTATTGGGTTTTTGTCTTTTAAAGAAAATA TCTATTACTTATATTTTTTAAAATATTACAATGGACTAGGTTAAAAAAAAGGGGCTACTT TTCTATTGAGCACTGGTAGTTTGAAGATAAATTCTCATATATGTATGGCTATAATTTATC TTTTTTCAGCGTCCTTATTTGAATGTAAAAGAAACTATTCTTGGGATAAAATTTCAGTGG AAGCACCAGTCATTTGAGGCTGGGATCAGTTACCTTAAGGTGACCACAGGGTTTGGAATC AGAAGATGAAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACACGCCGGTTGTGGCCTGGGGTGGGCCGGCTGTTTACTATAGGGACTATGCTGGGGCG AGGAAGACGAGCTTACAGCGCGTCCCTGGCCTTTGCAGAGGTTCTACGGCTGCCAAGCAA TCAACGCACGAAGCTCGTGTTCCCGCTGCAAGAACTCCAACGGTTTCTCGTCCCGGGCTC GAACCCAGACCTTCACCTGAAGATCTTCGACCCAACTCTGGACGACATCGCGAGGGCTGA GAGCATCTTCACGGCATCCGCCCGGAACCGCATCGATTACGTCAGCTCCGCTGTGCGTCT CGACCACGCCCCGGACCTCCGCTGCCCTGAGGTGTGTTTTATAGGTAGAAGCAATGTTGG AAAATCGTCTCTAATAAAGGCTTTATTTTCATTTGCTCCAGAGGTTGAGGTTAGAGTCTC CAAAAAACCGGGGCACACCAAGAAGATGAATTTTTTCAAAGTTGGAAGATATTTTACACT GGTGGATATGCCAGGTTATGGCTATAGAGCACCTGAAGATTTTGTCGACATGGTAGAAGA CTATCTAAAAGAACGGAGGAATTTGATGAGAACATTTTTGTTAGTGGATAGTGTTGTTGG AATTCAAAAAACAGACAATATTGCCATAGAGATGTGTGAAGAATTTGCATTACCTTATGT GATGGTATTAACAAAAATTGATAAATCTTCCAAGGGACGTCTTTTAAAACAAGTGCTTCA GATCCAGAAATTTGTTGACACTGAAACACAAGGGTGTTTTCCTCAGTTGTTTCCTGTAAG TGCTGTTACCTTTTCTGGAATCCATCTATTGAGATGCTTTATAGCAGATATAACAGGAAA TCTTAAGACTAGTGGCTTCCAGTTTAGCTGAAGATTCAAAATTCTCTATTTCAACTGAAG TTAAATACCTAGAATTTCAACATTGTTTTAAATGTTGTGTTTCTGTAACTTACATAAGGA TCACTTCAGCTTTAAAACCTGCATCTTCCCAAAGCAAGAATGAATTTGTGCCTGGTGGGG GAAAGGTTTAAAAATGATTGAATTATACCGTCCATTAGAATAGATACAAGATTTTTCTGT TTTAACAAACTGACAAGAACATATAGAAGAAGTCCATAAAATGAAAACCTGTTTGTTTCC TACTGTGTAGACAACGGTTTGCTATATTATTTATTGGGTTTTTGTCTTTTAAAGAAAATA TCTATTACTTATATTTTTTAAAATATTACAATGGACTAGGTTAAAAAAAAGGGGCTACTT TTCTATTGAGCACTGGTAGTTTGAAGATAAATTCTCATATATGTATGGCTATAATTTATC TTTTTTCAGCGTCCTTATTTGAATGTAAAAGAAACTATTCTTGGGATAAAATTTCAGTGG AAGCACCAGTCATTTGAGGCTGGGATCAGTTACCTTAAGGTGACCACAGGGTTTGGAATC AGAAGATGAAGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 7-334, gnl|bosTau2|chr1 (33455343-33455016) | |
| 7-334, gnl|Hg17|chr3 (114192548-114192875) | |
| 7-334, gnl|Mm7|chr16 (44523852-44523522) | |
| 430-561, gnl|bosTau2|chr1 (33450360-33450229) | |
| 430-561, gnl|canFam2|chr33 (20422629-20422810) | |
| 430-561, gnl|danRer3|chr9 (27107592-27107420) | |
| 430-561, gnl|echTel1|scaffold_277261 (6146-5964) | |
| 430-561, gnl|fr1|chrUn (345290123-345289964) | |
| 430-561, gnl|hg17|chr3 (114196645-114196828) | |
| 430-561, gnl|Hg17|chr3 (114196671-114196802) | |
| 430-561, gnl|mm7|chr16 (44521422-44521239) | |
| 430-561, gnl|Mm7|chr16 (44521395-44521264) | |
| 430-561, gnl|monDom2|scaffold_24 (7357198-7357378) | |
| 430-561, gnl|oryCun1|scaffold_211949 (335974-335791) | |
| 430-561, gnl|panTro1|chr2 (115917256-115917439) | |
| 430-561, gnl|rheMac2|chr2 (33034788-33034970) | |
| 430-561, gnl|rn3|chr11 (57544536-57544718) | |
| 430-561, gnl|tetNig1|chr2 (19000399-19000237) | |
| 562-669, gnl|bosTau2|chr1 (33449228-33449120) | |
| 562-669, gnl|canFam2|chr33 (20423903-20424057) | |
| 562-669, gnl|danRer3|chr9 (27107343-27107201) | |
| 562-669, gnl|echTel1|scaffold_277261 (5037-4890) | |
| 562-669, gnl|hg17|chr3 (114198410-114198564) | |
| 562-669, gnl|Hg17|chr3 (114198429-114198537) | |
| 562-669, gnl|loxAfr1|scaffold_200994 (184-338) | |
| 562-669, gnl|mm7|chr16 (44520147-44519996) | |
| 562-669, gnl|Mm7|chr16 (44520129-44520021) | |
| 562-669, gnl|monDom2|scaffold_24 (7358739-7358903) | |
| 562-669, gnl|oryCun1|scaffold_211949 (334943-334789) | |
| 562-669, gnl|panTro1|chr2 (115919106-115919260) | |
| 562-669, gnl|rheMac2|chr2 (33037036-33037190) | |
| 562-669, gnl|rn3|chr11 (57545941-57546092) | |
| 562-669, gnl|tetNig1|chr2 (19000041-18999935) | |
| 779-1151, gnl|bosTau2|chr1 (33441215-33440851) | |
| 779-1151, gnl|Hg17|chr3 (114202385-114202740) | |
| 779-1151, gnl|Mm7|chr16 (44516896-44516546) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 7-334, gnl|bosTau2|chr1 (33455343-33455016) | |
| 7-334, gnl|Hg17|chr3 (114192548-114192875) | |
| 7-334, gnl|Mm7|chr16 (44523852-44523522) | |
| 430-561, gnl|bosTau2|chr1 (33450360-33450229) | |
| 430-561, gnl|canFam2|chr33 (20422629-20422810) | |
| 430-561, gnl|danRer3|chr9 (27107592-27107420) | |
| 430-561, gnl|echTel1|scaffold_277261 (6146-5964) | |
| 430-561, gnl|fr1|chrUn (345290123-345289964) | |
| 430-561, gnl|hg17|chr3 (114196645-114196828) | |
| 430-561, gnl|Hg17|chr3 (114196671-114196802) | |
| 430-561, gnl|mm7|chr16 (44521422-44521239) | |
| 430-561, gnl|Mm7|chr16 (44521395-44521264) | |
| 430-561, gnl|monDom2|scaffold_24 (7357198-7357378) | |
| 430-561, gnl|oryCun1|scaffold_211949 (335974-335791) | |
| 430-561, gnl|panTro1|chr2 (115917256-115917439) | |
| 430-561, gnl|rheMac2|chr2 (33034788-33034970) | |
| 430-561, gnl|rn3|chr11 (57544536-57544718) | |
| 430-561, gnl|tetNig1|chr2 (19000399-19000237) | |
| 562-669, gnl|bosTau2|chr1 (33449228-33449120) | |
| 562-669, gnl|canFam2|chr33 (20423903-20424057) | |
| 562-669, gnl|danRer3|chr9 (27107343-27107201) | |
| 562-669, gnl|echTel1|scaffold_277261 (5037-4890) | |
| 562-669, gnl|hg17|chr3 (114198410-114198564) | |
| 562-669, gnl|Hg17|chr3 (114198429-114198537) | |
| 562-669, gnl|loxAfr1|scaffold_200994 (184-338) | |
| 562-669, gnl|mm7|chr16 (44520147-44519996) | |
| 562-669, gnl|Mm7|chr16 (44520129-44520021) | |
| 562-669, gnl|monDom2|scaffold_24 (7358739-7358903) | |
| 562-669, gnl|oryCun1|scaffold_211949 (334943-334789) | |
| 562-669, gnl|panTro1|chr2 (115919106-115919260) | |
| 562-669, gnl|rheMac2|chr2 (33037036-33037190) | |
| 562-669, gnl|rn3|chr11 (57545941-57546092) | |
| 562-669, gnl|tetNig1|chr2 (19000041-18999935) | |
| 779-1151, gnl|bosTau2|chr1 (33441215-33440851) | |
| 779-1151, gnl|Hg17|chr3 (114202385-114202740) | |
| 779-1151, gnl|Mm7|chr16 (44516896-44516546) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| lun (0.150489) | |
| che (0.136314) | |
| ste (0.135208) | |
| thg (0.126791) | |
| cbl (0.114797) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (0.150489) | |
| che (0.136314) | |
| ste (0.135208) | |
| thg (0.126791) | |
| cbl (0.114797) |