Non-Coding RNA Search

Ss1.1-Pig4-TMW8056O15.5

Sequence:


               
               CCGGCCTGACGGGTACCGGGGCCGCGCCCTCAAGAGGGTGGACGTCGAGAAGTCTCAAGG
GCCCTCGAAGCCTCCCCTCGTCGGGCCTCCCTCCCAGCAGGTCGTCCCTAACGGCAGCCA
TTTTAACTTTTAAAGGGAGCTGCTCCCAGGCCTCACACCGGACCCTTGAAGTCCGCGCCC
TCAAAAGCCAGGGGCGTGGACGCGCCTCCCATGCCAGTTCACCTCCTCCTCTCCTTGTTC
TACACCTCCAGCCTTCCTGGACTCTGGGAGTCTCCCGGGGCCCCTGCCTGCCTCGGGTTT
ATTTATTGACTGCTGCCTGTCTTTCCCCCCGTCCTCGAGAGAGGAGTGGGAGGTGAGAAG
CTCGCCCCCTCAGTGAGCCAGCTTTCGAGGGTAACTGGCCCACTCCCACTCCCCCCCCCT
CAGCCAAGCTGCCTTAACTCGCCCCTCCCCCCGGGCTTCCTCCACAGACTGGGCCCCGGG
CGGGCCGCACGGCGGACGGACGGGGCTGGGCCACGCGTGTTGTGTACAGAGTCCTCGGGC
CTCCTGGGACGTGCCTCCTCCTACTGTGTAGGAGCCTCCGCTTCCCAATACAGCTGTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGCCTGACGGGTACCGGGGCCGCGCCCTCAAGAGGGTGGACGTCGAGAAGTCTCAAGG
GCCCTCGAAGCCTCCCCTCGTCGGGCCTCCCTCCCAGCAGGTCGTCCCTAACGGCAGCCA
TTTTAACTTTTAAAGGGAGCTGCTCCCAGGCCTCACACCGGACCCTTGAAGTCCGCGCCC
TCAAAAGCCAGGGGCGTGGACGCGCCTCCCATGCCAGTTCACCTCCTCCTCTCCTTGTTC
TACACCTCCAGCCTTCCTGGACTCTGGGAGTCTCCCGGGGCCCCTGCCTGCCTCGGGTTT
ATTTATTGACTGCTGCCTGTCTTTCCCCCCGTCCTCGAGAGAGGAGTGGGAGGTGAGAAG
CTCGCCCCCTCAGTGAGCCAGCTTTCGAGGGTAACTGGCCCACTCCCACTCCCCCCCCCT
CAGCCAAGCTGCCTTAACTCGCCCCTCCCCCCGGGCTTCCTCCACAGACTGGGCCCCGGG
CGGGCCGCACGGCGGACGGACGGGGCTGGGCCACGCGTGTTGTGTACAGAGTCCTCGGGC
CTCCTGGGACGTGCCTCCTCCTACTGTGTAGGAGCCTCCGCTTCCCAATACAGCTGTGTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               120-357, + strand, RNAz p=0.97021
               

               
               328-484, - strand, RNAz p=0.997492

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-357, + strand, RNAz p=0.97021
               

               
               328-484, - strand, RNAz p=0.997492

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AB022434, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AB022434, +

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               2-600, gnl|bosTau2|chr3 (16472248-16472836)
               

               
               2-600, gnl|canFam2|chr17 (63274849-63275477)
               

               
               2-600, gnl|dasNov1|scaffold_81156 (2967-2199)
               

               
               2-600, gnl|echTel1|scaffold_312232 (107702-106938)
               

               
               2-600, gnl|hg17|chr1 (147917402-147918113)
               

               
               2-600, gnl|Hg17|chr1 (147918164-147917609)
               

               
               2-600, gnl|mm7|chr3 (95047831-95047165)
               

               
               2-600, gnl|Mm7|chr3 (95047115-95047599)
               

               
               2-600, gnl|monDom2|scaffold_44 (4312730-4313461)
               

               
               2-600, gnl|panTro1|chr1 (129652188-129652899)
               

               
               2-600, gnl|rheMac2|chr1 (129556693-129557405)
               

               
               2-600, gnl|rn3|chr2 (190041856-190041172)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-600, gnl|bosTau2|chr3 (16472248-16472836)
               

               
               2-600, gnl|canFam2|chr17 (63274849-63275477)
               

               
               2-600, gnl|dasNov1|scaffold_81156 (2967-2199)
               

               
               2-600, gnl|echTel1|scaffold_312232 (107702-106938)
               

               
               2-600, gnl|hg17|chr1 (147917402-147918113)
               

               
               2-600, gnl|Hg17|chr1 (147918164-147917609)
               

               
               2-600, gnl|mm7|chr3 (95047831-95047165)
               

               
               2-600, gnl|Mm7|chr3 (95047115-95047599)
               

               
               2-600, gnl|monDom2|scaffold_44 (4312730-4313461)
               

               
               2-600, gnl|panTro1|chr1 (129652188-129652899)
               

               
               2-600, gnl|rheMac2|chr1 (129556693-129557405)
               

               
               2-600, gnl|rn3|chr2 (190041856-190041172)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mas (0.210305)
               

               
               fbs (0.175346)
               

               
               ese (0.126502)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               fbs (0.175346)
               

               
               ese (0.126502)

	120-357, + strand, RNAz p=0.97021
	328-484, - strand, RNAz p=0.997492

	2-600, gnl\|bosTau2\|chr3 (16472248-16472836)
	2-600, gnl\|canFam2\|chr17 (63274849-63275477)
	2-600, gnl\|dasNov1\|scaffold_81156 (2967-2199)
	2-600, gnl\|echTel1\|scaffold_312232 (107702-106938)
	2-600, gnl\|hg17\|chr1 (147917402-147918113)
	2-600, gnl\|Hg17\|chr1 (147918164-147917609)
	2-600, gnl\|mm7\|chr3 (95047831-95047165)
	2-600, gnl\|Mm7\|chr3 (95047115-95047599)
	2-600, gnl\|monDom2\|scaffold_44 (4312730-4313461)
	2-600, gnl\|panTro1\|chr1 (129652188-129652899)
	2-600, gnl\|rheMac2\|chr1 (129556693-129557405)
	2-600, gnl\|rn3\|chr2 (190041856-190041172)