Non-Coding RNA Search

Ss1.1-Pig4-TMW8056O16.3.5

Sequence:


               
               GTAAACGGCTGTCTTAGCACGAACTGTAATTTATGTGGAAGTAACTTTGGAAAAGAGTGC
TTGCTTCAAAAGACAAAACAAAAAAAATCCTGTACTGCAGCTTACGTGAACCAATTCTAA
ATGCTAGAGATAACATTACTTAAATCCTCTATTTTAGCAATGATGGTCTACACAAGTGCT
TTAAGGTCTTGTGGGAGTGGGAATTGGGGGGTGAGGTGGGGGGATAGTCAGACCGTTATG
GTTCAGATTCCACTAAATTCCCCAAAGACAATATGACAGTAAATGATTAGTAGTACATTG
TTACACTGAAAATTCAACGAAGGAATTAGGAAACATGCAGAAGGGATTAGGGACCTAAGC
ATTATGACTGAATGCACTTTAGCATAAAGGGCACAGTTTGTATATTTTTACATGCATACC
AATTTATTGTTTAGTATTCCTCTGTTAAGAGATCAACTATTTAGTCTTTTTAAAAAAAAT
TTAGGTTAATTTTCTTACTCTGACATATAGGGGGAATTTATTGCTTACTCTGATATATAT
ATGAGGAATTTATTGCATCCTGCTTTCTAAAGCACATCCTGAACTGGATTATTGAGATAT
AGCACAACCATCTTTTTGGAGCACCTTCTGAGCACCTTTGGTGCTTGGAGGGACTCACTG
TGTCCCAGATAAGCGATGGTATTTGCCAATGGGTTTGACTACACCCCAAGTGGTTGCTTT
CTTCTCTGGTGGTATCTGTGCTTCTCATAATTTACTGAAAGATGCAATATTTTTATAAGA
TCTTTTGTATTGCTATTTGCCATGTTGCATATTAGAGCCAGGAGTCTAAAGGAGGAATAA
CAGGAAAAAACAAAAATAAAGCCTTAAACAACTTGAGCTCAGATCCCCAAACCCTATATT
CTACTTCTGATATTCCTGGGACACTAGTTTTTTTGTTTTTTTTTTTAATACTTAGAAGCT
TTGAAATGTAGATTTTTATGGCAGACAGTATTCCTAGGGTGCAATTAAACCAATTATAGG
CCTTTTTGGGGGGAGATGGTTTTCTAGTATTAAGGTTTTGGAACAATATAAACTTGAGTA
CATTTGTTGTACATAATTCATATTCCAAAGTGTATGGTGGGGGGGAGAGAGGTGTTTTAA
GTGATAGGCTTTTCTTTGTACTGCATTTTTAGAAATTTAGCTCTAATATTTTTTAGAGAT
GTAAAATATTCTGCTTTCTTACAGTCTTGCTTCCTCTGAAACATTTTTATTCAATAAAGC
TTTTAATTTACAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAAACGGCTGTCTTAGCACGAACTGTAATTTATGTGGAAGTAACTTTGGAAAAGAGTGC
TTGCTTCAAAAGACAAAACAAAAAAAATCCTGTACTGCAGCTTACGTGAACCAATTCTAA
ATGCTAGAGATAACATTACTTAAATCCTCTATTTTAGCAATGATGGTCTACACAAGTGCT
TTAAGGTCTTGTGGGAGTGGGAATTGGGGGGTGAGGTGGGGGGATAGTCAGACCGTTATG
GTTCAGATTCCACTAAATTCCCCAAAGACAATATGACAGTAAATGATTAGTAGTACATTG
TTACACTGAAAATTCAACGAAGGAATTAGGAAACATGCAGAAGGGATTAGGGACCTAAGC
ATTATGACTGAATGCACTTTAGCATAAAGGGCACAGTTTGTATATTTTTACATGCATACC
AATTTATTGTTTAGTATTCCTCTGTTAAGAGATCAACTATTTAGTCTTTTTAAAAAAAAT
TTAGGTTAATTTTCTTACTCTGACATATAGGGGGAATTTATTGCTTACTCTGATATATAT
ATGAGGAATTTATTGCATCCTGCTTTCTAAAGCACATCCTGAACTGGATTATTGAGATAT
AGCACAACCATCTTTTTGGAGCACCTTCTGAGCACCTTTGGTGCTTGGAGGGACTCACTG
TGTCCCAGATAAGCGATGGTATTTGCCAATGGGTTTGACTACACCCCAAGTGGTTGCTTT
CTTCTCTGGTGGTATCTGTGCTTCTCATAATTTACTGAAAGATGCAATATTTTTATAAGA
TCTTTTGTATTGCTATTTGCCATGTTGCATATTAGAGCCAGGAGTCTAAAGGAGGAATAA
CAGGAAAAAACAAAAATAAAGCCTTAAACAACTTGAGCTCAGATCCCCAAACCCTATATT
CTACTTCTGATATTCCTGGGACACTAGTTTTTTTGTTTTTTTTTTTAATACTTAGAAGCT
TTGAAATGTAGATTTTTATGGCAGACAGTATTCCTAGGGTGCAATTAAACCAATTATAGG
CCTTTTTGGGGGGAGATGGTTTTCTAGTATTAAGGTTTTGGAACAATATAAACTTGAGTA
CATTTGTTGTACATAATTCATATTCCAAAGTGTATGGTGGGGGGGAGAGAGGTGTTTTAA
GTGATAGGCTTTTCTTTGTACTGCATTTTTAGAAATTTAGCTCTAATATTTTTTAGAGAT
GTAAAATATTCTGCTTTCTTACAGTCTTGCTTCCTCTGAAACATTTTTATTCAATAAAGC
TTTTAATTTACAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               2-1272, gnl|bosTau2|chr5 (22962820-22964076)
               

               
               2-1272, gnl|Hg17|chr12 (48857036-48855844)
               

               
               2-1272, gnl|Mm7|chr15 (99765474-99763715)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1272, gnl|bosTau2|chr5 (22962820-22964076)
               

               
               2-1272, gnl|Hg17|chr12 (48857036-48855844)
               

               
               2-1272, gnl|Mm7|chr15 (99765474-99763715)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

Help | Less info


               
               nep (0.36785)
               

               
               eye (0.341006)
               

               
               fat (0.294855)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               ese (0.253004)
               

               
               rec (0.17307)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               eru (0.120048)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.36785)
               

               
               eye (0.341006)
               

               
               fat (0.294855)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               ese (0.253004)
               

               
               rec (0.17307)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               eru (0.120048)

	2-1272, gnl\|bosTau2\|chr5 (22962820-22964076)
	2-1272, gnl\|Hg17\|chr12 (48857036-48855844)
	2-1272, gnl\|Mm7\|chr15 (99765474-99763715)

	nep (0.36785)
	eye (0.341006)
	fat (0.294855)
	fce (0.271592)
	kid (0.259471)
	ese (0.253004)
	rec (0.17307)
	spl (0.143184)
	csk (0.140746)
	pla (0.133672)
	nmm (0.132802)
	ute (0.132784)
	tra (0.123092)
	cly (0.120642)
	eru (0.120048)