Ss1.1-Pig4-TMW8056O18.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGGTAACCATCTGTTCGGGGAAGAAATTCGTGGGATTTTTGAAAAACTCATATTTTGCG TAATTCTTCCGGAATAAAAATTTGCTTTCGCTCGCCAGCGTGTGCTGCACCTGGGTCACC CGCTCGTGGTCTTCCAGGCCCCTTTCTAATCCCAGATGCGGGTGGTGCTCCACCAGCGTC CAGCTGTTGTCATCCACACAATGACTTCTATAAACCAGCAACTGGCACAGGTCCCTGGCT GTCATGTCCGCCAGAATCTCCACCACTTTGCACGTCCCATCTTCACTAAAGACTTTAACA TCCTGCTTGGCAGCGGCCTGGCCTGGCGGTAAGGAGCCGGGCGAGAGCACAGGGGGGCTC CCGGGGCCACAGAGCTCGGGGAAGGGGTTGGGGATGGCAGGCAGCGACGAGGTCCTAAAC TGCTGGTCCTCCTCCTGCAGGCGCCTGGCGGCGAGAATGTGCAGGGGCTGGGACCGTGGC ACCCGGTGCCTCGGCGACGCCTGTGGCCGCAGGGGCCTTGCTCCCGGGGGCGGCGGGCCG CGGGCATGCTGGCCGTTGTGCAGCAGGGGCGCCGTCTCCGAGGCCGAGCACAGGCTCTCC AGGGACGCGTCCATGTCGTTCACCAGGGCCTCCAGGTCCACGTCATCCTCTTGGTGAGGG GCGAGCCGGTCGGGCTGCGCTGGGAAGCCAGGTCCTGCCAGATCTCGAGGATGGTGAGGG GATGTCTGCTCCACCTGGTCCTGGTAGTACGGATGGTGCAAAAAGGAATCCGGGCCGCCC GCTAAAGCCATGGGTCCCGGGTGGCTTTCCGCCAATCACATCGACTGGGCCTCGGCACCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGGTAACCATCTGTTCGGGGAAGAAATTCGTGGGATTTTTGAAAAACTCATATTTTGCG TAATTCTTCCGGAATAAAAATTTGCTTTCGCTCGCCAGCGTGTGCTGCACCTGGGTCACC CGCTCGTGGTCTTCCAGGCCCCTTTCTAATCCCAGATGCGGGTGGTGCTCCACCAGCGTC CAGCTGTTGTCATCCACACAATGACTTCTATAAACCAGCAACTGGCACAGGTCCCTGGCT GTCATGTCCGCCAGAATCTCCACCACTTTGCACGTCCCATCTTCACTAAAGACTTTAACA TCCTGCTTGGCAGCGGCCTGGCCTGGCGGTAAGGAGCCGGGCGAGAGCACAGGGGGGCTC CCGGGGCCACAGAGCTCGGGGAAGGGGTTGGGGATGGCAGGCAGCGACGAGGTCCTAAAC TGCTGGTCCTCCTCCTGCAGGCGCCTGGCGGCGAGAATGTGCAGGGGCTGGGACCGTGGC ACCCGGTGCCTCGGCGACGCCTGTGGCCGCAGGGGCCTTGCTCCCGGGGGCGGCGGGCCG CGGGCATGCTGGCCGTTGTGCAGCAGGGGCGCCGTCTCCGAGGCCGAGCACAGGCTCTCC AGGGACGCGTCCATGTCGTTCACCAGGGCCTCCAGGTCCACGTCATCCTCTTGGTGAGGG GCGAGCCGGTCGGGCTGCGCTGGGAAGCCAGGTCCTGCCAGATCTCGAGGATGGTGAGGG GATGTCTGCTCCACCTGGTCCTGGTAGTACGGATGGTGCAAAAAGGAATCCGGGCCGCCC GCTAAAGCCATGGGTCCCGGGTGGCTTTCCGCCAATCACATCGACTGGGCCTCGGCACCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 185-304, - strand, RNAz p=0.646841 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 185-304, - strand, RNAz p=0.646841 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 32-139, gnl|bosTau2|chr4 (272745-272852) | |
| 32-139, gnl|canFam2|chr18 (4898010-4898145) | |
| 32-139, gnl|danRer3|chr5 (42841396-42841523) | |
| 32-139, gnl|dasNov1|scaffold_4982 (43552-43682) | |
| 32-139, gnl|echTel1|scaffold_277131 (38369-38235) | |
| 32-139, gnl|fr1|chrUn (27386416-27386287) | |
| 32-139, gnl|galGal2|chr2 (80814637-80814772) | |
| 32-139, gnl|hg17|chr7 (50461071-50461206) | |
| 32-139, gnl|Hg17|chr7 (50461078-50461185) | |
| 32-139, gnl|loxAfr1|scaffold_1928 (121974-122109) | |
| 32-139, gnl|mm7|chr11 (11898690-11898824) | |
| 32-139, gnl|Mm7|chr11 (11898697-11898804) | |
| 32-139, gnl|monDom2|scaffold_5 (61118656-61118528) | |
| 32-139, gnl|oryCun1|scaffold_173057 (87156-87291) | |
| 32-139, gnl|panTro1|chr6 (52099824-52099959) | |
| 32-139, gnl|rheMac2|chr3 (75743667-75743532) | |
| 32-139, gnl|rn3|chr14 (92849348-92849482) | |
| 32-139, gnl|tetNig1|chr21 (4370831-4370965) | |
| 32-139, gnl|xenTro1|scaffold_26 (2739322-2739445) | |
| 146-306, gnl|bosTau2|chr4 (280000-280160) | |
| 146-306, gnl|canFam2|chr18 (4904519-4904706) | |
| 146-306, gnl|danRer3|chr5 (42848858-42849043) | |
| 146-306, gnl|dasNov1|scaffold_137780 (5808-5613) | |
| 146-306, gnl|echTel1|scaffold_278117 (51812-51613) | |
| 146-306, gnl|fr1|chrUn (27383099-27382905) | |
| 146-306, gnl|galGal2|chr2 (80820167-80820361) | |
| 146-306, gnl|hg17|chr7 (50468720-50468918) | |
| 146-306, gnl|Hg17|chr7 (50468728-50468888) | |
| 146-306, gnl|loxAfr1|scaffold_1928 (131396-131588) | |
| 146-306, gnl|mm7|chr11 (11903503-11903702) | |
| 146-306, gnl|Mm7|chr11 (11903511-11903671) | |
| 146-306, gnl|monDom2|scaffold_5 (61108893-61108695) | |
| 146-306, gnl|oryCun1|scaffold_130846 (527-716) | |
| 146-306, gnl|panTro1|chr6 (52107458-52107656) | |
| 146-306, gnl|rheMac2|chr3 (75735715-75735518) | |
| 146-306, gnl|rn3|chr14 (92854407-92854606) | |
| 146-306, gnl|tetNig1|chr21 (4372524-4372721) | |
| 146-306, gnl|xenTro1|scaffold_26 (2749530-2749718) | |
| 444-651, gnl|bosTau2|chr4 (310656-310860) | |
| 444-651, gnl|Hg17|chr7 (50516341-50516566) | |
| 444-651, gnl|Mm7|chr11 (11922430-11922652) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 32-139, gnl|bosTau2|chr4 (272745-272852) | |
| 32-139, gnl|canFam2|chr18 (4898010-4898145) | |
| 32-139, gnl|danRer3|chr5 (42841396-42841523) | |
| 32-139, gnl|dasNov1|scaffold_4982 (43552-43682) | |
| 32-139, gnl|echTel1|scaffold_277131 (38369-38235) | |
| 32-139, gnl|fr1|chrUn (27386416-27386287) | |
| 32-139, gnl|galGal2|chr2 (80814637-80814772) | |
| 32-139, gnl|hg17|chr7 (50461071-50461206) | |
| 32-139, gnl|Hg17|chr7 (50461078-50461185) | |
| 32-139, gnl|loxAfr1|scaffold_1928 (121974-122109) | |
| 32-139, gnl|mm7|chr11 (11898690-11898824) | |
| 32-139, gnl|Mm7|chr11 (11898697-11898804) | |
| 32-139, gnl|monDom2|scaffold_5 (61118656-61118528) | |
| 32-139, gnl|oryCun1|scaffold_173057 (87156-87291) | |
| 32-139, gnl|panTro1|chr6 (52099824-52099959) | |
| 32-139, gnl|rheMac2|chr3 (75743667-75743532) | |
| 32-139, gnl|rn3|chr14 (92849348-92849482) | |
| 32-139, gnl|tetNig1|chr21 (4370831-4370965) | |
| 32-139, gnl|xenTro1|scaffold_26 (2739322-2739445) | |
| 146-306, gnl|bosTau2|chr4 (280000-280160) | |
| 146-306, gnl|canFam2|chr18 (4904519-4904706) | |
| 146-306, gnl|danRer3|chr5 (42848858-42849043) | |
| 146-306, gnl|dasNov1|scaffold_137780 (5808-5613) | |
| 146-306, gnl|echTel1|scaffold_278117 (51812-51613) | |
| 146-306, gnl|fr1|chrUn (27383099-27382905) | |
| 146-306, gnl|galGal2|chr2 (80820167-80820361) | |
| 146-306, gnl|hg17|chr7 (50468720-50468918) | |
| 146-306, gnl|Hg17|chr7 (50468728-50468888) | |
| 146-306, gnl|loxAfr1|scaffold_1928 (131396-131588) | |
| 146-306, gnl|mm7|chr11 (11903503-11903702) | |
| 146-306, gnl|Mm7|chr11 (11903511-11903671) | |
| 146-306, gnl|monDom2|scaffold_5 (61108893-61108695) | |
| 146-306, gnl|oryCun1|scaffold_130846 (527-716) | |
| 146-306, gnl|panTro1|chr6 (52107458-52107656) | |
| 146-306, gnl|rheMac2|chr3 (75735715-75735518) | |
| 146-306, gnl|rn3|chr14 (92854407-92854606) | |
| 146-306, gnl|tetNig1|chr21 (4372524-4372721) | |
| 146-306, gnl|xenTro1|scaffold_26 (2749530-2749718) | |
| 444-651, gnl|bosTau2|chr4 (310656-310860) | |
| 444-651, gnl|Hg17|chr7 (50516341-50516566) | |
| 444-651, gnl|Mm7|chr11 (11922430-11922652) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.427716) |