Non-Coding RNA Search

Ss1.1-Pig4-TMW8056O22.5

Sequence:


               
               GGATCCTGCAACCAGGAAAGGGACCTAGGGAAAATCTTATGTAAAGATTTTTCAGCAGTT
GGCCCTCACCGAGTACGTGTATGTTGGTGAGGACTTCTGAAACCTTTTCACTGGGGCCAA
ATTGATTCTCAGTGGCCTTGAGTCCCGGTTTTATACCTGATTAGTAGAAGCATTTTAAAA
CTTAGGGGATATACAGATTTAAATGTTTAATTCTCCCAACCCCCTGAATAAACCTAGGCA
GCTATTAGGGAATCTGCTGTTGTTGTGTTCTCAAAATAATGGGTGTTTGAAACTTTCCCC
CCACTTATTAATTAGACTGTGTTGTATCATCACAGCTTTTTAAAAATACTCTTCAGATTC
ATGTCTTATAACAAAGTAAAATAGAGTCTCATGTTCAAATCAGTGTGTCTAATGAAAGTC
TTTTAAAGTATTTAAAAATATGTGTTGCTGAATTCAGGGGACCAGAATATGAAAATAATT
TCATAGTGATAGTTGTAATAGTAGTATATACAATACTAATTGTGTATATGGTAGCAACCA
AAATTCTTGAAGAACCAGAAGTCATCTTCCTCCTGCACAGACTGCATTTTGGCTATGACT
GTCTGATGACAAAGTATCTGAAGGAGAAGTTTATGATAGGGCTTTTCAGTTTTCAACCAG
CTGCTGTGACCTGGTATATCACATCATTAAAAGCCATATTTCCAACCTGTAACCACAGAT
TCTAAATGATTCTGAATAATGAATTGTGGTGAATGTCTCTTTTTGGTTGTAATTTATTTA
ACTTGAGTCAATAAAAATAATCATTGCTGAATACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATCCTGCAACCAGGAAAGGGACCTAGGGAAAATCTTATGTAAAGATTTTTCAGCAGTT
GGCCCTCACCGAGTACGTGTATGTTGGTGAGGACTTCTGAAACCTTTTCACTGGGGCCAA
ATTGATTCTCAGTGGCCTTGAGTCCCGGTTTTATACCTGATTAGTAGAAGCATTTTAAAA
CTTAGGGGATATACAGATTTAAATGTTTAATTCTCCCAACCCCCTGAATAAACCTAGGCA
GCTATTAGGGAATCTGCTGTTGTTGTGTTCTCAAAATAATGGGTGTTTGAAACTTTCCCC
CCACTTATTAATTAGACTGTGTTGTATCATCACAGCTTTTTAAAAATACTCTTCAGATTC
ATGTCTTATAACAAAGTAAAATAGAGTCTCATGTTCAAATCAGTGTGTCTAATGAAAGTC
TTTTAAAGTATTTAAAAATATGTGTTGCTGAATTCAGGGGACCAGAATATGAAAATAATT
TCATAGTGATAGTTGTAATAGTAGTATATACAATACTAATTGTGTATATGGTAGCAACCA
AAATTCTTGAAGAACCAGAAGTCATCTTCCTCCTGCACAGACTGCATTTTGGCTATGACT
GTCTGATGACAAAGTATCTGAAGGAGAAGTTTATGATAGGGCTTTTCAGTTTTCAACCAG
CTGCTGTGACCTGGTATATCACATCATTAAAAGCCATATTTCCAACCTGTAACCACAGAT
TCTAAATGATTCTGAATAATGAATTGTGGTGAATGTCTCTTTTTGGTTGTAATTTATTTA
ACTTGAGTCAATAAAAATAATCATTGCTGAATACAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               442-543, - strand, RNAz p=0.527557

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               442-543, - strand, RNAz p=0.527557

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-543, gnl|bosTau2|chr10 (41296785-41296214)
               

               
               1-543, gnl|Hg17|chr15 (49485846-49486504)
               

               
               1-543, gnl|Mm7|chr9 (54370792-54371296)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-543, gnl|bosTau2|chr10 (41296785-41296214)
               

               
               1-543, gnl|Hg17|chr15 (49485846-49486504)
               

               
               1-543, gnl|Mm7|chr9 (54370792-54371296)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cte (0.29274)
               

               
               sug (0.254582)
               

               
               bla (0.124347)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               sug (0.254582)
               

               
               bla (0.124347)

	1-543, gnl\|bosTau2\|chr10 (41296785-41296214)
	1-543, gnl\|Hg17\|chr15 (49485846-49486504)
	1-543, gnl\|Mm7\|chr9 (54370792-54371296)