Ss1.1-Pig4-TMW8056P03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTCTCCACCAAGACGCTGGTGGAGGCGAGTGGCGAACACACGGTGGAGGTGCGCACCCA GGTGCAGCAGCCCTCAGATGAGAACTGGGACCTGACGGGCACCCGACAGATCTGGCCCTG TGAGAGCCCCCGTTCCCACACCACCATTGCCAAGTACGCGCAGTACCAGGCTTCCTCCTT CCAGGAGTCCCTGCAGGAGGAGAAGGAGAGTGAAGATGAGGAGTCGGAGGAGCCGGACAG CACCACAGAAACCCCTCCTAGCAGCGCCCCGGACCCGAAGAACCATCACATCATCAAGTT TGGCACCAACATCGACCTGTCCGATGCCAAGCGGTGGAAGCCCCAGCTGCAGGAGCTGCT GAAGCTGCCCGCCTTCATGCGGGTGACCTCCACGGGCAACATGCTGAGCCACGTGGGCCA CACCATCCTGGGCATGAACACCGTGCAGCTGTACATGAAGGTCCCTGGCAGCCGAACGCC AGGCCATCAAGAGAACAACAACTTCTGCTCGGTCAACATCAACATTGGCCCCGGCGACTG CGAGTGGTTCGCGGTGCACGAGCACTACTGGGAGACTATCAGCGCCTTCTGCGACCGGCA CGGCGTGGATTACTTGACGGGTTCCTGGTGGCCAATCCTGGATGACCTCTATGCTTCCAA CATCCCTGTGTACCGCTTCGTGCAGCGCCCAGGAGACCTTGTGTGGATCAACGCGGGGAC CGTGCACTGGGTGCAGGCCACCGGCTGGTGCAACAACATTGCCTGGAACGTGGGGCCCCT CACCGCCTATCAGTACCAGCTGGCCCTGGAACGATACGAGTGGAACGAGGTGAAGAACGT CAAATCCATTGTGCCCATGATTCACGTGTCCTGGAACGTGGCTCGCACGGTCAAAATCAG CGACCCCGACTTGTTCAAGATGATCAAGTTCTGCCTCCTGCAGTCGATGAAGCACTGCCA GGTGCAGCGGGAGAGCCTGGTGCGGGCCGGGAAGAAAATCGCCTACCAGGGTCGGGTCAA GGACGAGCCCGCCTACTACTGCAACGAGTGCGACGTGGAGGTGTTCAACATCCTGTTCGT GACGAGCGAGAACGGCAGCCGCAACACGTACCTGGTGCACTGCGAGGCCTGTGCGCGGCG CCGCAGCGCCGGCCTGCAGGGCGTGGTGGTGCTGGAGCAGTACCGCACCGAGGAGCTGGC GCAGGCCTACGACGCCTTCACGCTGGCCCCCGCCAGCACGTCGCGATGAGGCCGGACGCC CCGCCGCCTGCCCGCCCGCAGGGCGCCGCGGGGCCACCAGCACACGCCTGGGCTGGACCT AGGTCCCGCCTCTGGCCGGGAAGGGGCCGGGCCCAGCCCTTCCACCCCATTGGCAGCTCC CCTCACTTAATTTATTAAGAGAAAGAATTTTTTTTAAACAAATATGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTCTCCACCAAGACGCTGGTGGAGGCGAGTGGCGAACACACGGTGGAGGTGCGCACCCA GGTGCAGCAGCCCTCAGATGAGAACTGGGACCTGACGGGCACCCGACAGATCTGGCCCTG TGAGAGCCCCCGTTCCCACACCACCATTGCCAAGTACGCGCAGTACCAGGCTTCCTCCTT CCAGGAGTCCCTGCAGGAGGAGAAGGAGAGTGAAGATGAGGAGTCGGAGGAGCCGGACAG CACCACAGAAACCCCTCCTAGCAGCGCCCCGGACCCGAAGAACCATCACATCATCAAGTT TGGCACCAACATCGACCTGTCCGATGCCAAGCGGTGGAAGCCCCAGCTGCAGGAGCTGCT GAAGCTGCCCGCCTTCATGCGGGTGACCTCCACGGGCAACATGCTGAGCCACGTGGGCCA CACCATCCTGGGCATGAACACCGTGCAGCTGTACATGAAGGTCCCTGGCAGCCGAACGCC AGGCCATCAAGAGAACAACAACTTCTGCTCGGTCAACATCAACATTGGCCCCGGCGACTG CGAGTGGTTCGCGGTGCACGAGCACTACTGGGAGACTATCAGCGCCTTCTGCGACCGGCA CGGCGTGGATTACTTGACGGGTTCCTGGTGGCCAATCCTGGATGACCTCTATGCTTCCAA CATCCCTGTGTACCGCTTCGTGCAGCGCCCAGGAGACCTTGTGTGGATCAACGCGGGGAC CGTGCACTGGGTGCAGGCCACCGGCTGGTGCAACAACATTGCCTGGAACGTGGGGCCCCT CACCGCCTATCAGTACCAGCTGGCCCTGGAACGATACGAGTGGAACGAGGTGAAGAACGT CAAATCCATTGTGCCCATGATTCACGTGTCCTGGAACGTGGCTCGCACGGTCAAAATCAG CGACCCCGACTTGTTCAAGATGATCAAGTTCTGCCTCCTGCAGTCGATGAAGCACTGCCA GGTGCAGCGGGAGAGCCTGGTGCGGGCCGGGAAGAAAATCGCCTACCAGGGTCGGGTCAA GGACGAGCCCGCCTACTACTGCAACGAGTGCGACGTGGAGGTGTTCAACATCCTGTTCGT GACGAGCGAGAACGGCAGCCGCAACACGTACCTGGTGCACTGCGAGGCCTGTGCGCGGCG CCGCAGCGCCGGCCTGCAGGGCGTGGTGGTGCTGGAGCAGTACCGCACCGAGGAGCTGGC GCAGGCCTACGACGCCTTCACGCTGGCCCCCGCCAGCACGTCGCGATGAGGCCGGACGCC CCGCCGCCTGCCCGCCCGCAGGGCGCCGCGGGGCCACCAGCACACGCCTGGGCTGGACCT AGGTCCCGCCTCTGGCCGGGAAGGGGCCGGGCCCAGCCCTTCCACCCCATTGGCAGCTCC CCTCACTTAATTTATTAAGAGAAAGAATTTTTTTTAAACAAATATGAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1-159, - strand, RNAz p=0.871135 | |
| 333-451, + strand, RNAz p=0.562433 | |
| 624-743, + strand, RNAz p=0.620776 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-159, - strand, RNAz p=0.871135 | |
| 333-451, + strand, RNAz p=0.562433 | |
| 624-743, + strand, RNAz p=0.620776 |
| Aligned organism(s): 75 entry(ies) | More info |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
| 1-197, gnl|bosTau2|chr19 (15382116-15381920) | |
| 1-197, gnl|Hg17|chr17 (7695074-7695270) | |
| 1-197, gnl|Mm7|chr11 (69483845-69483649) | |
| 333-483, gnl|bosTau2|chr19 (15381474-15381324) | |
| 333-483, gnl|canFam2|chr5 (35702675-35702863) | |
| 333-483, gnl|danRer3|chr10 (12812432-12812269) | |
| 333-483, gnl|dasNov1|scaffold_77097 (5108-5284) | |
| 333-483, gnl|echTel1|scaffold_294139 (54531-54360) | |
| 333-483, gnl|fr1|chrUn (53851056-53850873) | |
| 333-483, gnl|galGal2|chr1 (104563391-104563232) | |
| 333-483, gnl|hg17|chr17 (7695686-7695867) | |
| 333-483, gnl|Hg17|chr17 (7695690-7695840) | |
| 333-483, gnl|loxAfr1|scaffold_19862 (32044-31863) | |
| 333-483, gnl|mm7|chr11 (69483244-69483063) | |
| 333-483, gnl|Mm7|chr11 (69483238-69483088) | |
| 333-483, gnl|monDom2|scaffold_29 (17919939-17919785) | |
| 333-483, gnl|oryCun1|scaffold_209667 (452-637) | |
| 333-483, gnl|panTro1|chr19_random (44048643-44048462) | |
| 333-483, gnl|rheMac2|chr16 (7599535-7599716) | |
| 333-483, gnl|rn3|chr10 (56209740-56209557) | |
| 333-483, gnl|tetNig1|chrUn_random (20960493-20960661) | |
| 333-483, gnl|xenTro1|scaffold_1707 (59464-59290) | |
| 588-785, gnl|bosTau2|chr19 (15380995-15380798) | |
| 588-785, gnl|canFam2|chr5 (35703169-35703381) | |
| 588-785, gnl|canFam2|chrX (38885517-38885302) | |
| 588-785, gnl|canFam2|chrX (38885323-38885519) | |
| 588-785, gnl|danRer3|chr10 (12811635-12811431) | |
| 588-785, gnl|danRer3|chr9 (32685664-32685452) | |
| 588-785, gnl|danRer3|chr9 (32685470-32685665) | |
| 588-785, gnl|dasNov1|scaffold_77097 (5795-5598) | |
| 588-785, gnl|dasNov1|scaffold_77097 (5586-5798) | |
| 588-785, gnl|dasNov1|scaffold_77097 (5614-5795) | |
| 588-785, gnl|echTel1|scaffold_255561 (4130-4338) | |
| 588-785, gnl|echTel1|scaffold_255561 (4324-4128) | |
| 588-785, gnl|echTel1|scaffold_294139 (54056-53845) | |
| 588-785, gnl|fr1|chrUn (161467726-161467532) | |
| 588-785, gnl|fr1|chrUn (53850495-53850291) | |
| 588-785, gnl|fr1|chrUn (161467532-161467728) | |
| 588-785, gnl|galGal2|chr1 (104558146-104558357) | |
| 588-785, gnl|galGal2|chr1 (104558338-104558146) | |
| 588-785, gnl|galGal2|chr1 (104558340-104558144) | |
| 588-785, gnl|hg17|chr17 (7696174-7696385) | |
| 588-785, gnl|Hg17|chr17 (7696182-7696379) | |
| 588-785, gnl|hg17|chrX (44705238-44705434) | |
| 588-785, gnl|hg17|chrY (13848967-13849179) | |
| 588-785, gnl|loxAfr1|scaffold_19862 (31536-31325) | |
| 588-785, gnl|loxAfr1|scaffold_668 (33817-34032) | |
| 588-785, gnl|loxAfr1|scaffold_668 (34011-33815) | |
| 588-785, gnl|mm7|chr11 (69482779-69482563) | |
| 588-785, gnl|Mm7|chr11 (69482768-69482567) | |
| 588-785, gnl|mm7|chrX (16705185-16704971) | |
| 588-785, gnl|mm7|chrX (16704991-16705187) | |
| 588-785, gnl|monDom2|scaffold_29 (17916433-17916638) | |
| 588-785, gnl|monDom2|scaffold_29 (17916624-17916433) | |
| 588-785, gnl|monDom2|scaffold_29 (17916627-17916431) | |
| 588-785, gnl|oryCun1|scaffold_198513 (70888-70673) | |
| 588-785, gnl|oryCun1|scaffold_198513 (70694-70890) | |
| 588-785, gnl|oryCun1|scaffold_209667 (931-1143) | |
| 588-785, gnl|panTro1|chrX (46190449-46190645) | |
| 588-785, gnl|panTro1|chrY (14439160-14439370) | |
| 588-785, gnl|rheMac2|chr16 (7600018-7600229) | |
| 588-785, gnl|rheMac2|chrX (42850984-42850768) | |
| 588-785, gnl|rheMac2|chrX (42850790-42850986) | |
| 588-785, gnl|rn3|chr10 (56209294-56209078) | |
| 588-785, gnl|rn3|chrX (15932668-15932882) | |
| 588-785, gnl|rn3|chrX (15932862-15932666) | |
| 588-785, gnl|tetNig1|chr3 (5699219-5699000) | |
| 588-785, gnl|tetNig1|chr3 (5699025-5699219) | |
| 588-785, gnl|tetNig1|chrUn_random (20961003-20961207) | |
| 588-785, gnl|xenTro1|scaffold_16 (51895-52105) | |
| 588-785, gnl|xenTro1|scaffold_16 (52085-51893) | |
| 588-785, gnl|xenTro1|scaffold_1707 (58293-58085) | |
| 1055-1226, gnl|bosTau2|chr19 (15380030-15379859) | |
| 1055-1226, gnl|Hg17|chr17 (7697253-7697424) | |
| 1055-1226, gnl|Mm7|chr11 (69481684-69481513) |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-197, gnl|bosTau2|chr19 (15382116-15381920) | |
| 1-197, gnl|Hg17|chr17 (7695074-7695270) | |
| 1-197, gnl|Mm7|chr11 (69483845-69483649) | |
| 333-483, gnl|bosTau2|chr19 (15381474-15381324) | |
| 333-483, gnl|canFam2|chr5 (35702675-35702863) | |
| 333-483, gnl|danRer3|chr10 (12812432-12812269) | |
| 333-483, gnl|dasNov1|scaffold_77097 (5108-5284) | |
| 333-483, gnl|echTel1|scaffold_294139 (54531-54360) | |
| 333-483, gnl|fr1|chrUn (53851056-53850873) | |
| 333-483, gnl|galGal2|chr1 (104563391-104563232) | |
| 333-483, gnl|hg17|chr17 (7695686-7695867) | |
| 333-483, gnl|Hg17|chr17 (7695690-7695840) | |
| 333-483, gnl|loxAfr1|scaffold_19862 (32044-31863) | |
| 333-483, gnl|mm7|chr11 (69483244-69483063) | |
| 333-483, gnl|Mm7|chr11 (69483238-69483088) | |
| 333-483, gnl|monDom2|scaffold_29 (17919939-17919785) | |
| 333-483, gnl|oryCun1|scaffold_209667 (452-637) | |
| 333-483, gnl|panTro1|chr19_random (44048643-44048462) | |
| 333-483, gnl|rheMac2|chr16 (7599535-7599716) | |
| 333-483, gnl|rn3|chr10 (56209740-56209557) | |
| 333-483, gnl|tetNig1|chrUn_random (20960493-20960661) | |
| 333-483, gnl|xenTro1|scaffold_1707 (59464-59290) | |
| 588-785, gnl|bosTau2|chr19 (15380995-15380798) | |
| 588-785, gnl|canFam2|chr5 (35703169-35703381) | |
| 588-785, gnl|canFam2|chrX (38885517-38885302) | |
| 588-785, gnl|canFam2|chrX (38885323-38885519) | |
| 588-785, gnl|danRer3|chr10 (12811635-12811431) | |
| 588-785, gnl|danRer3|chr9 (32685664-32685452) | |
| 588-785, gnl|danRer3|chr9 (32685470-32685665) | |
| 588-785, gnl|dasNov1|scaffold_77097 (5795-5598) | |
| 588-785, gnl|dasNov1|scaffold_77097 (5586-5798) | |
| 588-785, gnl|dasNov1|scaffold_77097 (5614-5795) | |
| 588-785, gnl|echTel1|scaffold_255561 (4130-4338) | |
| 588-785, gnl|echTel1|scaffold_255561 (4324-4128) | |
| 588-785, gnl|echTel1|scaffold_294139 (54056-53845) | |
| 588-785, gnl|fr1|chrUn (161467726-161467532) | |
| 588-785, gnl|fr1|chrUn (53850495-53850291) | |
| 588-785, gnl|fr1|chrUn (161467532-161467728) | |
| 588-785, gnl|galGal2|chr1 (104558146-104558357) | |
| 588-785, gnl|galGal2|chr1 (104558338-104558146) | |
| 588-785, gnl|galGal2|chr1 (104558340-104558144) | |
| 588-785, gnl|hg17|chr17 (7696174-7696385) | |
| 588-785, gnl|Hg17|chr17 (7696182-7696379) | |
| 588-785, gnl|hg17|chrX (44705238-44705434) | |
| 588-785, gnl|hg17|chrY (13848967-13849179) | |
| 588-785, gnl|loxAfr1|scaffold_19862 (31536-31325) | |
| 588-785, gnl|loxAfr1|scaffold_668 (33817-34032) | |
| 588-785, gnl|loxAfr1|scaffold_668 (34011-33815) | |
| 588-785, gnl|mm7|chr11 (69482779-69482563) | |
| 588-785, gnl|Mm7|chr11 (69482768-69482567) | |
| 588-785, gnl|mm7|chrX (16705185-16704971) | |
| 588-785, gnl|mm7|chrX (16704991-16705187) | |
| 588-785, gnl|monDom2|scaffold_29 (17916433-17916638) | |
| 588-785, gnl|monDom2|scaffold_29 (17916624-17916433) | |
| 588-785, gnl|monDom2|scaffold_29 (17916627-17916431) | |
| 588-785, gnl|oryCun1|scaffold_198513 (70888-70673) | |
| 588-785, gnl|oryCun1|scaffold_198513 (70694-70890) | |
| 588-785, gnl|oryCun1|scaffold_209667 (931-1143) | |
| 588-785, gnl|panTro1|chrX (46190449-46190645) | |
| 588-785, gnl|panTro1|chrY (14439160-14439370) | |
| 588-785, gnl|rheMac2|chr16 (7600018-7600229) | |
| 588-785, gnl|rheMac2|chrX (42850984-42850768) | |
| 588-785, gnl|rheMac2|chrX (42850790-42850986) | |
| 588-785, gnl|rn3|chr10 (56209294-56209078) | |
| 588-785, gnl|rn3|chrX (15932668-15932882) | |
| 588-785, gnl|rn3|chrX (15932862-15932666) | |
| 588-785, gnl|tetNig1|chr3 (5699219-5699000) | |
| 588-785, gnl|tetNig1|chr3 (5699025-5699219) | |
| 588-785, gnl|tetNig1|chrUn_random (20961003-20961207) | |
| 588-785, gnl|xenTro1|scaffold_16 (51895-52105) | |
| 588-785, gnl|xenTro1|scaffold_16 (52085-51893) | |
| 588-785, gnl|xenTro1|scaffold_1707 (58293-58085) | |
| 1055-1226, gnl|bosTau2|chr19 (15380030-15379859) | |
| 1055-1226, gnl|Hg17|chr17 (7697253-7697424) | |
| 1055-1226, gnl|Mm7|chr11 (69481684-69481513) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| med (0.116252) |