Non-Coding RNA Search

Ss1.1-Pig4-TMW8056P04.3

Sequence:


               
               CGAGTGGAGCAGCCGGAGCTGGCGGGCAAGGGAGCCAGCCTGAAGGCAGGATCAGCGGGA
GCGGCTCCGAGGGCAGAACAGTTGCTTTTCCCTGGCCTGGGTCAGTGAGGAGCCCTGGGG
ACTCCGCCTGCCCCGGCGTGGTGCTCCCATCGGCATCCGACGTGCGCCTCACGGGAAAGG
ACACCAGACTAGGTCCCTGCCCCTACCTTCCAGGTACCCGGCAGGTTTTCTACCAGATGT
TCCATTGTAATAATGCTGGGTAGCCAAATCCGTTTCTGGAACCATGAAAATTTTGTTGGT
TTTTGACTTTGACAATACAATCATAGATGACAATAGTGACACCTGGATTATACAGTGTGC
TCCAGAGAAAAAGCTTCCTATTGAACTACGGGATTCTTATAAAAAAGGATTTTGGACAGA
ATTTATGGGTAGAGTCTTTAAGTATTTGGGAGATGAAGGTGTAAGAGAAGACGAAATGAA
AAGAGCAATGATGTCAATGCCTTTCACTCCAGGGATGCTGGAACTTTTAAACTTTATAAG
AAAGAACAAGGATAAATTTGACTGCATCATTATTTCAGATTCAAATTCTGTCTTCATAGA
GTGGGTTTTAGAAGCTACCAGTTTTTATGATGTGTTTGATGAAGTATTTACAAATCCAGC
AGCTTTTAATAGCAGTGGTCATCTCACTGTGGAAAATTATCATGCTCATTCTTGCAGTAG
GTGCCCTCAAAATCTTTGCAAAAATGTAGTTTTGGTAGAATTTGTAGGTAAACAGTTAAA
ACAAGGAGTGAATTATGCACATATTGTTTATATAGGTGATGGCGGGAACGATGTCTGTCC
AGTAACCTTTTTAAAGAAGAATGATGTTGCCATGCCACGGAAAGGATATACTTTACAGAA
AACTCTTTCTAGGATGTCTCAAAATCTTGAGCCTATGGAATCTTCTGTTGTGTCTTGGTC
TTCAGGCATTGAAATAATTTCTCATTTACAATTTCTAATAAAAGAGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGTGGAGCAGCCGGAGCTGGCGGGCAAGGGAGCCAGCCTGAAGGCAGGATCAGCGGGA
GCGGCTCCGAGGGCAGAACAGTTGCTTTTCCCTGGCCTGGGTCAGTGAGGAGCCCTGGGG
ACTCCGCCTGCCCCGGCGTGGTGCTCCCATCGGCATCCGACGTGCGCCTCACGGGAAAGG
ACACCAGACTAGGTCCCTGCCCCTACCTTCCAGGTACCCGGCAGGTTTTCTACCAGATGT
TCCATTGTAATAATGCTGGGTAGCCAAATCCGTTTCTGGAACCATGAAAATTTTGTTGGT
TTTTGACTTTGACAATACAATCATAGATGACAATAGTGACACCTGGATTATACAGTGTGC
TCCAGAGAAAAAGCTTCCTATTGAACTACGGGATTCTTATAAAAAAGGATTTTGGACAGA
ATTTATGGGTAGAGTCTTTAAGTATTTGGGAGATGAAGGTGTAAGAGAAGACGAAATGAA
AAGAGCAATGATGTCAATGCCTTTCACTCCAGGGATGCTGGAACTTTTAAACTTTATAAG
AAAGAACAAGGATAAATTTGACTGCATCATTATTTCAGATTCAAATTCTGTCTTCATAGA
GTGGGTTTTAGAAGCTACCAGTTTTTATGATGTGTTTGATGAAGTATTTACAAATCCAGC
AGCTTTTAATAGCAGTGGTCATCTCACTGTGGAAAATTATCATGCTCATTCTTGCAGTAG
GTGCCCTCAAAATCTTTGCAAAAATGTAGTTTTGGTAGAATTTGTAGGTAAACAGTTAAA
ACAAGGAGTGAATTATGCACATATTGTTTATATAGGTGATGGCGGGAACGATGTCTGTCC
AGTAACCTTTTTAAAGAAGAATGATGTTGCCATGCCACGGAAAGGATATACTTTACAGAA
AACTCTTTCTAGGATGTCTCAAAATCTTGAGCCTATGGAATCTTCTGTTGTGTCTTGGTC
TTCAGGCATTGAAATAATTTCTCATTTACAATTTCTAATAAAAGAGTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55613881|ref|XP_515888.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55613881|ref|XP_515888.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               456-575, - strand, RNAz p=0.559285
               

               
               889-1008, - strand, RNAz p=0.651296

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               456-575, - strand, RNAz p=0.559285
               

               
               889-1008, - strand, RNAz p=0.651296

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               42-226, gnl|bosTau2|chr2 (18954456-18954634)
               

               
               42-226, gnl|canFam2|chr36 (17412476-17413141)
               

               
               42-226, gnl|dasNov1|scaffold_57530 (1232-1875)
               

               
               42-226, gnl|echTel1|scaffold_284055 (10240-10918)
               

               
               42-226, gnl|hg17|chr2 (170376266-170376937)
               

               
               42-226, gnl|Hg17|chr2 (170376581-170376760)
               

               
               42-226, gnl|loxAfr1|scaffold_23577 (10530-9849)
               

               
               42-226, gnl|mm7|chr2 (69719952-69720564)
               

               
               42-226, gnl|oryCun1|scaffold_196522 (11053-11689)
               

               
               42-226, gnl|panTro1|chr13 (59986098-59986769)
               

               
               42-226, gnl|rheMac2|chr12 (33331456-33332134)
               

               
               42-226, gnl|rn3|chr3 (51833863-51834477)
               


               
               258-1008, gnl|bosTau2|chr2 (18959118-18959869)
               

               
               258-1008, gnl|Hg17|chr2 (170382962-170383713)
               

               
               258-1008, gnl|Mm7|chr2 (69726024-69726775)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               42-226, gnl|bosTau2|chr2 (18954456-18954634)
               

               
               42-226, gnl|canFam2|chr36 (17412476-17413141)
               

               
               42-226, gnl|dasNov1|scaffold_57530 (1232-1875)
               

               
               42-226, gnl|echTel1|scaffold_284055 (10240-10918)
               

               
               42-226, gnl|hg17|chr2 (170376266-170376937)
               

               
               42-226, gnl|Hg17|chr2 (170376581-170376760)
               

               
               42-226, gnl|loxAfr1|scaffold_23577 (10530-9849)
               

               
               42-226, gnl|mm7|chr2 (69719952-69720564)
               

               
               42-226, gnl|oryCun1|scaffold_196522 (11053-11689)
               

               
               42-226, gnl|panTro1|chr13 (59986098-59986769)
               

               
               42-226, gnl|rheMac2|chr12 (33331456-33332134)
               

               
               42-226, gnl|rn3|chr3 (51833863-51834477)
               


               
               258-1008, gnl|bosTau2|chr2 (18959118-18959869)
               

               
               258-1008, gnl|Hg17|chr2 (170382962-170383713)
               

               
               258-1008, gnl|Mm7|chr2 (69726024-69726775)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               mga (0.160205)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               bla (0.124347)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               bla (0.124347)

	456-575, - strand, RNAz p=0.559285
	889-1008, - strand, RNAz p=0.651296

	42-226, gnl\|bosTau2\|chr2 (18954456-18954634)
	42-226, gnl\|canFam2\|chr36 (17412476-17413141)
	42-226, gnl\|dasNov1\|scaffold_57530 (1232-1875)
	42-226, gnl\|echTel1\|scaffold_284055 (10240-10918)
	42-226, gnl\|hg17\|chr2 (170376266-170376937)
	42-226, gnl\|Hg17\|chr2 (170376581-170376760)
	42-226, gnl\|loxAfr1\|scaffold_23577 (10530-9849)
	42-226, gnl\|mm7\|chr2 (69719952-69720564)
	42-226, gnl\|oryCun1\|scaffold_196522 (11053-11689)
	42-226, gnl\|panTro1\|chr13 (59986098-59986769)
	42-226, gnl\|rheMac2\|chr12 (33331456-33332134)
	42-226, gnl\|rn3\|chr3 (51833863-51834477)

	258-1008, gnl\|bosTau2\|chr2 (18959118-18959869)
	258-1008, gnl\|Hg17\|chr2 (170382962-170383713)
	258-1008, gnl\|Mm7\|chr2 (69726024-69726775)

	mga (0.160205)
	fco (0.157208)
	ski (0.146735)
	lin (0.145603)
	ste (0.135208)
	kid (0.129735)
	ret (0.128733)
	ese (0.126502)
	bla (0.124347)