Non-Coding RNA Search

Ss1.1-Pig4-TMW8056P11.3

Sequence:


               
               ACCCGTGGATTTAAGTGCTTCTGTGGAAGTTGTAGAACAAGGAGAAGCAGAAAAAGAAGA
GACGCCTCCTCCTGTTGAACCAGAAGAGGAAGAAGAAACTGAAGATGCTGGACTGGATGA
TTGGGAAGCTATGGCTAGCGATGAGGAGACAGAAACAGAAGGAAACACGGTGCATATAGA
AGTAAAAGAAAACCCTGAAGAAGAGGAGGAGGAGGAGGAAGAGGAGGAGGAAGAAGAAGA
GAGTGAAGAGGAGGAGGAGGAAGAAGGAGAGAGTGAAGGCAGTGAAGCTGATGAAGAAGA
TGAAAAGGTGTCAGATGAGAAGGATGCAGGGAAAACCTTAGATAAAAAGCCAAGTAAAGA
AGTGAGCTCAGAATCTGAGTATGACTCAGACGACGATCGAACTAAAGAAGAACGGGCTTA
TGACAAAGCAAAACGGAGGATTGAGAAACGACGACTTGAACATAGTAAAAATGTAAATAC
AGAAAAGCTAAGAGCTCCTGTTATTTGTGTACTTGGTCATGTGGACACAGGGAAGACAAA
AATTCTAGATAAACTCCGTCACACACACGTACAAGATGGTGAAGCAGGTGGTATCACGCA
GCAGATTGGCGCCACCAATGTTCCTCTTGAAGCTATTAATGAACAAACTAAGATGATTAA
AAATTTTGATAGGGAGAATGTACGGATTCCAGGAATGCTGATTATTGACACTCCTGGGCA
TGAGTCTTTCAGTAATCTGAGAAACAGAGGAAGCTCTCTTTGTGATATTGCCATTTTGGT
TGTTGATATTATGCATGGTTTGGAACCCCAGACAATTGAATCTATCAACCTTTTGAAATC
TAAAAAATGTCCCTTCATTGTTGCACTCAATAAGATTGATAGGTTGTATGATTGGAAAAA
GAGCCCCGATACTGATGTGGCTGTTACTTTAAAGAAGCAGAAAAAGAATACAAAAGACGA
ATTCGAGGAGAGAGCAAAGGCTATTATTGTGGAATTTGCACAGCAGGGGTTGAATGCAGC
TCTGTTTTATGAGAATAAGGATCCCCGCACTTTTGTGTCCTTGGTACCTACCTCTGCGCA
TACTGGCGATGGCATGGGAAGTCTGATTTACCTTCTCGTCGAGCTGACTCAGACCATGTT
GAGCAAGAGACTCGCTCACTGTGAAGAGCTGAGAGCACAGGTCATGGAGGTTAAGGCTCT
CCCAGGAATGGGCACCACTATAGATGTCATATTGATCAATGGACGTTTGAAGGAAGGAGA
TACAATTATTGTTCCTGGAGTAGAAGGGCCCATTGTCACTCAGATCCGAGGCCTCCTTTT
ACCTCCTCCTATGAAGGAGTTAAGGGTGAAGAACCAGTATGAAAAGCATAAGGAAGTGGA
AGCAGCTCAGGGGGTGAAGATTCTTGGGAAGGACCTGGAGAAAACACTGGCTGGTTTGCC
CCTCCTTGTGGCTTATAAAGAAGATGAAATCCCAGTTCTCAAAGATGAACTGATCCATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCGTGGATTTAAGTGCTTCTGTGGAAGTTGTAGAACAAGGAGAAGCAGAAAAAGAAGA
GACGCCTCCTCCTGTTGAACCAGAAGAGGAAGAAGAAACTGAAGATGCTGGACTGGATGA
TTGGGAAGCTATGGCTAGCGATGAGGAGACAGAAACAGAAGGAAACACGGTGCATATAGA
AGTAAAAGAAAACCCTGAAGAAGAGGAGGAGGAGGAGGAAGAGGAGGAGGAAGAAGAAGA
GAGTGAAGAGGAGGAGGAGGAAGAAGGAGAGAGTGAAGGCAGTGAAGCTGATGAAGAAGA
TGAAAAGGTGTCAGATGAGAAGGATGCAGGGAAAACCTTAGATAAAAAGCCAAGTAAAGA
AGTGAGCTCAGAATCTGAGTATGACTCAGACGACGATCGAACTAAAGAAGAACGGGCTTA
TGACAAAGCAAAACGGAGGATTGAGAAACGACGACTTGAACATAGTAAAAATGTAAATAC
AGAAAAGCTAAGAGCTCCTGTTATTTGTGTACTTGGTCATGTGGACACAGGGAAGACAAA
AATTCTAGATAAACTCCGTCACACACACGTACAAGATGGTGAAGCAGGTGGTATCACGCA
GCAGATTGGCGCCACCAATGTTCCTCTTGAAGCTATTAATGAACAAACTAAGATGATTAA
AAATTTTGATAGGGAGAATGTACGGATTCCAGGAATGCTGATTATTGACACTCCTGGGCA
TGAGTCTTTCAGTAATCTGAGAAACAGAGGAAGCTCTCTTTGTGATATTGCCATTTTGGT
TGTTGATATTATGCATGGTTTGGAACCCCAGACAATTGAATCTATCAACCTTTTGAAATC
TAAAAAATGTCCCTTCATTGTTGCACTCAATAAGATTGATAGGTTGTATGATTGGAAAAA
GAGCCCCGATACTGATGTGGCTGTTACTTTAAAGAAGCAGAAAAAGAATACAAAAGACGA
ATTCGAGGAGAGAGCAAAGGCTATTATTGTGGAATTTGCACAGCAGGGGTTGAATGCAGC
TCTGTTTTATGAGAATAAGGATCCCCGCACTTTTGTGTCCTTGGTACCTACCTCTGCGCA
TACTGGCGATGGCATGGGAAGTCTGATTTACCTTCTCGTCGAGCTGACTCAGACCATGTT
GAGCAAGAGACTCGCTCACTGTGAAGAGCTGAGAGCACAGGTCATGGAGGTTAAGGCTCT
CCCAGGAATGGGCACCACTATAGATGTCATATTGATCAATGGACGTTTGAAGGAAGGAGA
TACAATTATTGTTCCTGGAGTAGAAGGGCCCATTGTCACTCAGATCCGAGGCCTCCTTTT
ACCTCCTCCTATGAAGGAGTTAAGGGTGAAGAACCAGTATGAAAAGCATAAGGAAGTGGA
AGCAGCTCAGGGGGTGAAGATTCTTGGGAAGGACCTGGAGAAAACACTGGCTGGTTTGCC
CCTCCTTGTGGCTTATAAAGAAGATGAAATCCCAGTTCTCAAAGATGAACTGATCCATGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61833869|ref|XP_614583.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61833869|ref|XP_614583.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               285-1500, gnl|bosTau2|chr11 (1510083-1508870)
               

               
               285-1500, gnl|Hg17|chr2 (99451457-99469264)
               

               
               285-1500, gnl|Mm7|chr1 (38277496-38290190)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               285-1500, gnl|bosTau2|chr11 (1510083-1508870)
               

               
               285-1500, gnl|Hg17|chr2 (99451457-99469264)
               

               
               285-1500, gnl|Mm7|chr1 (38277496-38290190)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cut (0.169924)
               

               
               tbr (0.154178)
               

               
               eru (0.120048)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               tbr (0.154178)
               

               
               eru (0.120048)

	285-1500, gnl\|bosTau2\|chr11 (1510083-1508870)
	285-1500, gnl\|Hg17\|chr2 (99451457-99469264)
	285-1500, gnl\|Mm7\|chr1 (38277496-38290190)