Ss1.1-Pig4-TMW8056P14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGCTGAGGCGTGGGTATGGCGTCCCGCGGGCGGAGACCGGAGCACAGCGGGCCTCCGGA GCTGGTGAGGCCTGTGGCCCGCGGGTACCCTCTCCTCCTATCCTAGGGCGTGGGTATGGC GTCCCGCGGGCGGAGACCGGAGCACAGCGGGCCTCCGGAGCTGTTTTACGACAAAAATGA AGCCCGGAAATACGTGCGCAATTCACGGATGATTGATGTCCAAACCAAGATGGCTGGGCG AGCCTTGGAGCTCCTTCATCTCCCTGAGGATCAGCCCTGTTACCTGCTGGATATTGGCTG CGGTTCTGGACTGAGTGGAGATTACCTTTCGGATGAGGGGCACTACTGGGTGGGCATTGA CATCAGCCCCGCCATGCTGGACGCGGCCTTGGACCGAGACACTTCAGGAGACCTGCTTCT TGGGGACATGGGTCAGGGCATCCCCTTCAAACCAGGCTCCTTTGATGGTTGTATCAGCAT TTCTGCCGTGCAGTGGCTCTGCAATGCCAACAAGAAGTCCGACATTCCTGCCAAGCGCCT GTACTGCTTCTTTTCTTCTCTCTATGCTGTTCTGGTCCGTGGAGCCCGAGCTGTCCTGCA GCTGTACCCCGAGAACTCAGAGCAGTTGGAGCTGATCACCACCCAGGCCACCAAGGCCGG CTTCACCGGTGGTGTGGTGGTGGACTACCCCAACAGTGCCAAAGCCAAGAAGTTCTACCT CTGTTTGTTTTCTGGACCTTCGGCCTTCCTACCAAAGGGCCTGTCCGAGGACAACGAGGA AGAGGAGCCCAGGGAGTCCACGTTCACGGCTGAGAGGGTCCCTTTCAGGATGGCGAGGCG AGGAGTGGTGAGGAAGAGCCGAGAATGGGTGCTGGAGAAGAAGGAGCGCCGGCGGCGGCA GGGCAAGGAGGTCCGACCTGACACTCAATACACTGGCCGCAGGCGCAAGCCCCGCTTCTG AGCAGGTGGCTGCTCCAGTGGGACAGCTTGGGGACCACACTGCTGTGAGCTGTGCCATCC AGCCCAGACACTCACCTCTGGAGCGTTACTATACTGAAGTGCCTACTTTATCAGCTGACA AAAATAGTGTTTCAGAAAAGTTCTAGGAGCTCGTGCTGTGGCCCAGTGGGGTAAGAATCC AACTACATTGGCTTGGGTCAGTGTGGAGGCATGGGTTCCATCCCTGGCCCAGGAACTTCC ATATGCCATGAGGCCATTTAAAAAAAAAGTTCTGAAGTTCTAAAAGTGTATTTTCTCTGC TAAAAAAAAATTCTGAGAGCATCTTATTTTGTTCTAAAAGCAATAAACTGCTTTCTGTGG AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGCTGAGGCGTGGGTATGGCGTCCCGCGGGCGGAGACCGGAGCACAGCGGGCCTCCGGA GCTGGTGAGGCCTGTGGCCCGCGGGTACCCTCTCCTCCTATCCTAGGGCGTGGGTATGGC GTCCCGCGGGCGGAGACCGGAGCACAGCGGGCCTCCGGAGCTGTTTTACGACAAAAATGA AGCCCGGAAATACGTGCGCAATTCACGGATGATTGATGTCCAAACCAAGATGGCTGGGCG AGCCTTGGAGCTCCTTCATCTCCCTGAGGATCAGCCCTGTTACCTGCTGGATATTGGCTG CGGTTCTGGACTGAGTGGAGATTACCTTTCGGATGAGGGGCACTACTGGGTGGGCATTGA CATCAGCCCCGCCATGCTGGACGCGGCCTTGGACCGAGACACTTCAGGAGACCTGCTTCT TGGGGACATGGGTCAGGGCATCCCCTTCAAACCAGGCTCCTTTGATGGTTGTATCAGCAT TTCTGCCGTGCAGTGGCTCTGCAATGCCAACAAGAAGTCCGACATTCCTGCCAAGCGCCT GTACTGCTTCTTTTCTTCTCTCTATGCTGTTCTGGTCCGTGGAGCCCGAGCTGTCCTGCA GCTGTACCCCGAGAACTCAGAGCAGTTGGAGCTGATCACCACCCAGGCCACCAAGGCCGG CTTCACCGGTGGTGTGGTGGTGGACTACCCCAACAGTGCCAAAGCCAAGAAGTTCTACCT CTGTTTGTTTTCTGGACCTTCGGCCTTCCTACCAAAGGGCCTGTCCGAGGACAACGAGGA AGAGGAGCCCAGGGAGTCCACGTTCACGGCTGAGAGGGTCCCTTTCAGGATGGCGAGGCG AGGAGTGGTGAGGAAGAGCCGAGAATGGGTGCTGGAGAAGAAGGAGCGCCGGCGGCGGCA GGGCAAGGAGGTCCGACCTGACACTCAATACACTGGCCGCAGGCGCAAGCCCCGCTTCTG AGCAGGTGGCTGCTCCAGTGGGACAGCTTGGGGACCACACTGCTGTGAGCTGTGCCATCC AGCCCAGACACTCACCTCTGGAGCGTTACTATACTGAAGTGCCTACTTTATCAGCTGACA AAAATAGTGTTTCAGAAAAGTTCTAGGAGCTCGTGCTGTGGCCCAGTGGGGTAAGAATCC AACTACATTGGCTTGGGTCAGTGTGGAGGCATGGGTTCCATCCCTGGCCCAGGAACTTCC ATATGCCATGAGGCCATTTAAAAAAAAAGTTCTGAAGTTCTAAAAGTGTATTTTCTCTGC TAAAAAAAAATTCTGAGAGCATCTTATTTTGTTCTAAAAGCAATAAACTGCTTTCTGTGG AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 203-309, gnl|bosTau2|chr25 (29964911-29965017) | |
| 203-309, gnl|canFam2|chr6 (9594781-9594678) | |
| 203-309, gnl|danRer3|chrNA (35375403-35375506) | |
| 203-309, gnl|echTel1|scaffold_314130 (48630-48733) | |
| 203-309, gnl|fr1|chrUn (213279464-213279361) | |
| 203-309, gnl|galGal2|chrUn (161179070-161178967) | |
| 203-309, gnl|hg17|chr7 (72545615-72545718) | |
| 203-309, gnl|Hg17|chr7 (72545618-72545724) | |
| 203-309, gnl|loxAfr1|scaffold_39354 (12891-12815) | |
| 203-309, gnl|mm7|chr5 (134032628-134032525) | |
| 203-309, gnl|Mm7|chr5 (134032623-134032517) | |
| 203-309, gnl|monDom2|scaffold_77 (5985183-5985286) | |
| 203-309, gnl|oryCun1|scaffold_186210 (3401-3504) | |
| 203-309, gnl|rheMac2|chr3 (51221101-51221204) | |
| 203-309, gnl|rn3|chr12_random (680467-680570) | |
| 203-309, gnl|tetNig1|chr16 (1933520-1933623) | |
| 203-309, gnl|xenTro1|scaffold_32 (555512-555615) | |
| 476-576, gnl|bosTau2|chr25 (29967871-29967971) | |
| 476-576, gnl|canFam2|chr6 (9591647-9591518) | |
| 476-576, gnl|danRer3|chrNA (35377824-35377949) | |
| 476-576, gnl|dasNov1|scaffold_139852 (750-878) | |
| 476-576, gnl|echTel1|scaffold_314130 (49545-49673) | |
| 476-576, gnl|fr1|chrUn (213278766-213278647) | |
| 476-576, gnl|galGal2|chrUn (161177913-161177784) | |
| 476-576, gnl|hg17|chr7 (72549875-72550003) | |
| 476-576, gnl|Hg17|chr7 (72549895-72549995) | |
| 476-576, gnl|loxAfr1|scaffold_39354 (9782-9654) | |
| 476-576, gnl|mm7|chr5 (134030507-134030379) | |
| 476-576, gnl|Mm7|chr5 (134030485-134030385) | |
| 476-576, gnl|monDom2|scaffold_77 (5987070-5987193) | |
| 476-576, gnl|oryCun1|scaffold_186210 (5498-5630) | |
| 476-576, gnl|panTro1|chr6 (74288825-74288953) | |
| 476-576, gnl|rheMac2|chr3 (51224991-51225119) | |
| 476-576, gnl|rn3|chr12_random (683389-683517) | |
| 476-576, gnl|tetNig1|chr16 (1934081-1934197) | |
| 476-576, gnl|xenTro1|scaffold_32 (559650-559766) | |
| 904-1106, gnl|bosTau2|chr25 (29974835-29975031) | |
| 904-1106, gnl|Mm7|chr5 (134024707-134024470) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 203-309, gnl|bosTau2|chr25 (29964911-29965017) | |
| 203-309, gnl|canFam2|chr6 (9594781-9594678) | |
| 203-309, gnl|danRer3|chrNA (35375403-35375506) | |
| 203-309, gnl|echTel1|scaffold_314130 (48630-48733) | |
| 203-309, gnl|fr1|chrUn (213279464-213279361) | |
| 203-309, gnl|galGal2|chrUn (161179070-161178967) | |
| 203-309, gnl|hg17|chr7 (72545615-72545718) | |
| 203-309, gnl|Hg17|chr7 (72545618-72545724) | |
| 203-309, gnl|loxAfr1|scaffold_39354 (12891-12815) | |
| 203-309, gnl|mm7|chr5 (134032628-134032525) | |
| 203-309, gnl|Mm7|chr5 (134032623-134032517) | |
| 203-309, gnl|monDom2|scaffold_77 (5985183-5985286) | |
| 203-309, gnl|oryCun1|scaffold_186210 (3401-3504) | |
| 203-309, gnl|rheMac2|chr3 (51221101-51221204) | |
| 203-309, gnl|rn3|chr12_random (680467-680570) | |
| 203-309, gnl|tetNig1|chr16 (1933520-1933623) | |
| 203-309, gnl|xenTro1|scaffold_32 (555512-555615) | |
| 476-576, gnl|bosTau2|chr25 (29967871-29967971) | |
| 476-576, gnl|canFam2|chr6 (9591647-9591518) | |
| 476-576, gnl|danRer3|chrNA (35377824-35377949) | |
| 476-576, gnl|dasNov1|scaffold_139852 (750-878) | |
| 476-576, gnl|echTel1|scaffold_314130 (49545-49673) | |
| 476-576, gnl|fr1|chrUn (213278766-213278647) | |
| 476-576, gnl|galGal2|chrUn (161177913-161177784) | |
| 476-576, gnl|hg17|chr7 (72549875-72550003) | |
| 476-576, gnl|Hg17|chr7 (72549895-72549995) | |
| 476-576, gnl|loxAfr1|scaffold_39354 (9782-9654) | |
| 476-576, gnl|mm7|chr5 (134030507-134030379) | |
| 476-576, gnl|Mm7|chr5 (134030485-134030385) | |
| 476-576, gnl|monDom2|scaffold_77 (5987070-5987193) | |
| 476-576, gnl|oryCun1|scaffold_186210 (5498-5630) | |
| 476-576, gnl|panTro1|chr6 (74288825-74288953) | |
| 476-576, gnl|rheMac2|chr3 (51224991-51225119) | |
| 476-576, gnl|rn3|chr12_random (683389-683517) | |
| 476-576, gnl|tetNig1|chr16 (1934081-1934197) | |
| 476-576, gnl|xenTro1|scaffold_32 (559650-559766) | |
| 904-1106, gnl|bosTau2|chr25 (29974835-29975031) | |
| 904-1106, gnl|Mm7|chr5 (134024707-134024470) |
| Expressed library(ies): 27 entry(ies) | More info |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
| che (0.545256) | |
| cov (0.528611) | |
| cje (0.495704) | |
| cki (0.495704) | |
| cst (0.420109) | |
| hlv (0.278513) | |
| fce (0.271592) | |
| ssp (0.271039) | |
| nmm (0.265604) | |
| cly (0.241284) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| fty (0.17584) | |
| ton (0.1755) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| csp (0.161186) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| ste (0.135208) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.545256) | |
| cov (0.528611) | |
| cje (0.495704) | |
| cki (0.495704) | |
| cst (0.420109) | |
| hlv (0.278513) | |
| fce (0.271592) | |
| ssp (0.271039) | |
| nmm (0.265604) | |
| cly (0.241284) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| fty (0.17584) | |
| ton (0.1755) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| csp (0.161186) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| ste (0.135208) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| jej (0.0989218) | |
| eje (0.0988338) |