Ss1.1-Pig4-TMW8056P17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACGCACCGGAGGTCCTGGCTCGGGAAAACGCCCTCTGCAGCGAAGGAGAGACCACGCAG CCATGCCACCCTATGGGACCCTTACAGCCCTCCTACTCCTGCCACCTCTGCTGCTGCTGC ACGCTGTTCTGGCCGTGCCCCTGGACCGGGGGGCGTCCAAGGAGGAGAATCCCGCGACCG AGAGCCCCGACACAGGCCTGTACTACCACCGGTACCTCCAGGAGGTCATCAACGTGCTGG AGACGGACGGGCACTTCCGGGAAAAGCTGCAGGCTGCCAATGCCGAGGACATCAAGAGCG GGAAGCTGAGCCGGGAGCTGGACTTCGTCAGCCACCATGTCCGCACCAAACTGGATGAGC TCAAGCGGCAGGAAGTGTCCAGGCTGCGGATGCTGCTCAAGGCCAAGATGGACGCAGAGC AGGAGCCCAATGTGCAGTTGGATCACCTGAACCTCCTAAAACAGTTTGAACACCTGGACC CACAAAATCAGCACACATTTGAGGCCCGGGACCTGGAGCTGCTGATCCAGACGGCCACCC GGGACCTTGCCCAGTACGATGCTGCCCATCATGAAGAGTTCAAACGCTACGAGATGCTCA AGGAACATGAGAGACGGCGTTATCTGGAGTCTCTAGGAGAGGAGCAGCGCAAGGAGGCAG AGAAGAAGCTGGAAGAGCAACAGCGCCGGCACCGAGAACACCCCAAAGTTAATGTGCCTG GCAGCCAAGCCCAGTTGAAGGAGGTGTGGGAGGAACTGGATGGATTGGATCCCAACAGGT TTAACCCCAAGACCTTCTTCATACTGCATGACATCAACAGCGATGGTGTCCTAGATGAGC AGGAGCTGGAGGCCCTCTTCACCAAGGAGCTGGAGAAGGTGTATGACCCGAAGAATGAGG AAGACGACATGCGGGAGATGGAGGAGGAGCGGCTGCGCATGCGCGAGCACGTGATGAAGA ATGTGGACACCAACCAGGACCGCCTTGTGACGCTGGATGAGTTCCTCGCATCCACACAGA GGAAGGAGTTCGGGGACACCGGGGAGGGCTGGGAGACAGTAGAGATGCACCCTGCCTACA CGGAGGATGAGCTCAGGCGTTTTGAGGAAGAGCTGGCTGCCCGGGAAGCAGAGCTCAATG CCAAGGCCCAGCGCCTCAGCCAGGAGACTGAGGCTCTGGGGCGCTCCCAAGGCCGCCTGG AGGCCCAGAAGAGAGAGCTGCAGCAGGCCGTTCTGCAAATGGAACAGAGGAAACAGCAGC AGCAAGGCCACAAGGACCCAGCCACTGGCCCCGAGGGACAGCTCAAGTTCCACCCGGACA CAGATGACGCACCTGTCCCAGCTCCGGCTGGTGACCAGAAGGACGTGGATGCTTCAGAAA AGAAAGTTCCTGAACAGACCCCAGAGCTGCCCCAGCTGGATTCACAGCACCTGTGATCTC TCTGGGACCCCAGCACTCTGTGTTCCTTCCAAGGCTGATGGGTTCGAGGTGTCACAATCA ACCTCCTCTGGGGGCTTGGCGACATGTGTGACCTCCTGGGGGAGGGGGAACAGGATGGCT TTTCCAGGCGTCGTCTCTGCTGCCTCTGCTTCTGCAGCCTTCCAGTCTGTGGTCCCTTCA TTTTCTGTCCCCCACCAAGGGACCCACCCTCTTGCGTCCAGTCGAGCACTCATTGGCTCA GTCTAACTTAGGGAAGCGCCCCCTGCCCAAGAGGCTCTGCTCCACACCTGCCTTTCTCCG TGGTTTGGCCTCACCGCCCAGGTTGTTGCCACCATAGCATCCCGTGTCCTCACAGCTGCT GGAGTCCTGCTGGCTGCTCAGTTCTCTTGGTTGACAGGGCTTGGGTGGTCCCTCATGATG TTTCTCAACCTTTTGTGGGACCAGCAACGCCTCAAAGACAGCATCTTCCCCCAGGCTGGG TGTGAGGACCAGAAGAGCCCTTAGCAGCGCTGCCCAGCTCTGATCCCAGGAGCGCCAGCT CTCCCTGACCCTGCCTTCCAGCCACCTCTGCCTCCTCCCTGACGACTTGACCCCTAGCCC TTTCCCCCACAGCCCCAGAGGGGGCCCGGAGCTGACCTCGCCCCAGGATGGCTTCCAGCC CCTCAGCCTCATGTGGGAGGCCCTGCCTACCTTTCTGGCCTTATCTCATGTGACTCCCTG TCCTGCTCTGTACTCTGGTTCCATCCAAATACACTTTCTGGAACAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACGCACCGGAGGTCCTGGCTCGGGAAAACGCCCTCTGCAGCGAAGGAGAGACCACGCAG CCATGCCACCCTATGGGACCCTTACAGCCCTCCTACTCCTGCCACCTCTGCTGCTGCTGC ACGCTGTTCTGGCCGTGCCCCTGGACCGGGGGGCGTCCAAGGAGGAGAATCCCGCGACCG AGAGCCCCGACACAGGCCTGTACTACCACCGGTACCTCCAGGAGGTCATCAACGTGCTGG AGACGGACGGGCACTTCCGGGAAAAGCTGCAGGCTGCCAATGCCGAGGACATCAAGAGCG GGAAGCTGAGCCGGGAGCTGGACTTCGTCAGCCACCATGTCCGCACCAAACTGGATGAGC TCAAGCGGCAGGAAGTGTCCAGGCTGCGGATGCTGCTCAAGGCCAAGATGGACGCAGAGC AGGAGCCCAATGTGCAGTTGGATCACCTGAACCTCCTAAAACAGTTTGAACACCTGGACC CACAAAATCAGCACACATTTGAGGCCCGGGACCTGGAGCTGCTGATCCAGACGGCCACCC GGGACCTTGCCCAGTACGATGCTGCCCATCATGAAGAGTTCAAACGCTACGAGATGCTCA AGGAACATGAGAGACGGCGTTATCTGGAGTCTCTAGGAGAGGAGCAGCGCAAGGAGGCAG AGAAGAAGCTGGAAGAGCAACAGCGCCGGCACCGAGAACACCCCAAAGTTAATGTGCCTG GCAGCCAAGCCCAGTTGAAGGAGGTGTGGGAGGAACTGGATGGATTGGATCCCAACAGGT TTAACCCCAAGACCTTCTTCATACTGCATGACATCAACAGCGATGGTGTCCTAGATGAGC AGGAGCTGGAGGCCCTCTTCACCAAGGAGCTGGAGAAGGTGTATGACCCGAAGAATGAGG AAGACGACATGCGGGAGATGGAGGAGGAGCGGCTGCGCATGCGCGAGCACGTGATGAAGA ATGTGGACACCAACCAGGACCGCCTTGTGACGCTGGATGAGTTCCTCGCATCCACACAGA GGAAGGAGTTCGGGGACACCGGGGAGGGCTGGGAGACAGTAGAGATGCACCCTGCCTACA CGGAGGATGAGCTCAGGCGTTTTGAGGAAGAGCTGGCTGCCCGGGAAGCAGAGCTCAATG CCAAGGCCCAGCGCCTCAGCCAGGAGACTGAGGCTCTGGGGCGCTCCCAAGGCCGCCTGG AGGCCCAGAAGAGAGAGCTGCAGCAGGCCGTTCTGCAAATGGAACAGAGGAAACAGCAGC AGCAAGGCCACAAGGACCCAGCCACTGGCCCCGAGGGACAGCTCAAGTTCCACCCGGACA CAGATGACGCACCTGTCCCAGCTCCGGCTGGTGACCAGAAGGACGTGGATGCTTCAGAAA AGAAAGTTCCTGAACAGACCCCAGAGCTGCCCCAGCTGGATTCACAGCACCTGTGATCTC TCTGGGACCCCAGCACTCTGTGTTCCTTCCAAGGCTGATGGGTTCGAGGTGTCACAATCA ACCTCCTCTGGGGGCTTGGCGACATGTGTGACCTCCTGGGGGAGGGGGAACAGGATGGCT TTTCCAGGCGTCGTCTCTGCTGCCTCTGCTTCTGCAGCCTTCCAGTCTGTGGTCCCTTCA TTTTCTGTCCCCCACCAAGGGACCCACCCTCTTGCGTCCAGTCGAGCACTCATTGGCTCA GTCTAACTTAGGGAAGCGCCCCCTGCCCAAGAGGCTCTGCTCCACACCTGCCTTTCTCCG TGGTTTGGCCTCACCGCCCAGGTTGTTGCCACCATAGCATCCCGTGTCCTCACAGCTGCT GGAGTCCTGCTGGCTGCTCAGTTCTCTTGGTTGACAGGGCTTGGGTGGTCCCTCATGATG TTTCTCAACCTTTTGTGGGACCAGCAACGCCTCAAAGACAGCATCTTCCCCCAGGCTGGG TGTGAGGACCAGAAGAGCCCTTAGCAGCGCTGCCCAGCTCTGATCCCAGGAGCGCCAGCT CTCCCTGACCCTGCCTTCCAGCCACCTCTGCCTCCTCCCTGACGACTTGACCCCTAGCCC TTTCCCCCACAGCCCCAGAGGGGGCCCGGAGCTGACCTCGCCCCAGGATGGCTTCCAGCC CCTCAGCCTCATGTGGGAGGCCCTGCCTACCTTTCTGGCCTTATCTCATGTGACTCCCTG TCCTGCTCTGTACTCTGGTTCCATCCAAATACACTTTCTGGAACAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
| 1054-1227, + strand, RNAz p=0.993801 | |
| 1090-1227, + strand, RNAz p=0.798221 | |
| 1360-1506, - strand, RNAz p=0.656067 | |
| 1547-1648, - strand, RNAz p=0.572831 | |
| 1897-2109, - strand, RNAz p=0.849672 |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1054-1227, + strand, RNAz p=0.993801 | |
| 1090-1227, + strand, RNAz p=0.798221 | |
| 1360-1506, - strand, RNAz p=0.656067 | |
| 1547-1648, - strand, RNAz p=0.572831 | |
| 1897-2109, - strand, RNAz p=0.849672 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 50-198, gnl|bosTau2|chr18 (48082066-48082214) | |
| 50-198, gnl|Hg17|chr19 (54095853-54096010) | |
| 50-198, gnl|Mm7|chr7 (41685577-41685424) | |
| 295-435, gnl|bosTau2|chr18 (48087084-48087224) | |
| 295-435, gnl|Hg17|chr19 (54100820-54100960) | |
| 295-435, gnl|Mm7|chr7 (41677445-41677305) | |
| 517-720, gnl|bosTau2|chr18 (48090742-48090944) | |
| 517-720, gnl|Hg17|chr19 (54108064-54108266) | |
| 517-720, gnl|Mm7|chr7 (41674651-41674452) | |
| 1054-1227, gnl|bosTau2|chr18 (48095990-48096163) | |
| 1054-1227, gnl|canFam2|chr1 (110343166-110342969) | |
| 1054-1227, gnl|danRer3|chr3 (24323008-24322796) | |
| 1054-1227, gnl|fr1|chrUn (267986768-267986947) | |
| 1054-1227, gnl|hg17|chr19 (54116221-54116417) | |
| 1054-1227, gnl|Hg17|chr19 (54116221-54116394) | |
| 1054-1227, gnl|loxAfr1|scaffold_19191 (27409-27212) | |
| 1054-1227, gnl|mm7|chr7 (41670520-41670323) | |
| 1054-1227, gnl|Mm7|chr7 (41670518-41670345) | |
| 1054-1227, gnl|monDom2|scaffold_105 (4173056-4173278) | |
| 1054-1227, gnl|panTro1|chr20 (51539727-51539923) | |
| 1054-1227, gnl|rheMac2|chr19 (55204151-55204347) | |
| 1054-1227, gnl|rn3|chr1 (96041119-96040941) | |
| 1054-1227, gnl|tetNig1|chr3 (14658725-14658548) | |
| 1054-1227, gnl|xenTro1|scaffold_250 (1022717-1022902) | |
| 1321-2109, gnl|bosTau2|chr18 (48096817-48097637) | |
| 1321-2109, gnl|Hg17|chr19 (54117384-54118253) | |
| 1321-2109, gnl|Mm7|chr7 (41669680-41668929) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 50-198, gnl|bosTau2|chr18 (48082066-48082214) | |
| 50-198, gnl|Hg17|chr19 (54095853-54096010) | |
| 50-198, gnl|Mm7|chr7 (41685577-41685424) | |
| 295-435, gnl|bosTau2|chr18 (48087084-48087224) | |
| 295-435, gnl|Hg17|chr19 (54100820-54100960) | |
| 295-435, gnl|Mm7|chr7 (41677445-41677305) | |
| 517-720, gnl|bosTau2|chr18 (48090742-48090944) | |
| 517-720, gnl|Hg17|chr19 (54108064-54108266) | |
| 517-720, gnl|Mm7|chr7 (41674651-41674452) | |
| 1054-1227, gnl|bosTau2|chr18 (48095990-48096163) | |
| 1054-1227, gnl|canFam2|chr1 (110343166-110342969) | |
| 1054-1227, gnl|danRer3|chr3 (24323008-24322796) | |
| 1054-1227, gnl|fr1|chrUn (267986768-267986947) | |
| 1054-1227, gnl|hg17|chr19 (54116221-54116417) | |
| 1054-1227, gnl|Hg17|chr19 (54116221-54116394) | |
| 1054-1227, gnl|loxAfr1|scaffold_19191 (27409-27212) | |
| 1054-1227, gnl|mm7|chr7 (41670520-41670323) | |
| 1054-1227, gnl|Mm7|chr7 (41670518-41670345) | |
| 1054-1227, gnl|monDom2|scaffold_105 (4173056-4173278) | |
| 1054-1227, gnl|panTro1|chr20 (51539727-51539923) | |
| 1054-1227, gnl|rheMac2|chr19 (55204151-55204347) | |
| 1054-1227, gnl|rn3|chr1 (96041119-96040941) | |
| 1054-1227, gnl|tetNig1|chr3 (14658725-14658548) | |
| 1054-1227, gnl|xenTro1|scaffold_250 (1022717-1022902) | |
| 1321-2109, gnl|bosTau2|chr18 (48096817-48097637) | |
| 1321-2109, gnl|Hg17|chr19 (54117384-54118253) | |
| 1321-2109, gnl|Mm7|chr7 (41669680-41668929) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| cga (0.558191) | |
| eep (0.490256) | |
| amn (0.417711) | |
| cty (0.41632) | |
| ute (0.398353) | |
| nep (0.36785) | |
| eru (0.360144) | |
| cli (0.305623) | |
| jej (0.296765) | |
| nmm (0.265604) | |
| cov (0.264306) | |
| cly (0.241284) | |
| med (0.232504) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| csp (0.161186) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| pgl (0.118483) | |
| ebs (0.118301) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (0.558191) | |
| eep (0.490256) | |
| amn (0.417711) | |
| cty (0.41632) | |
| ute (0.398353) | |
| nep (0.36785) | |
| eru (0.360144) | |
| cli (0.305623) | |
| jej (0.296765) | |
| nmm (0.265604) | |
| cov (0.264306) | |
| cly (0.241284) | |
| med (0.232504) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| csp (0.161186) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| pgl (0.118483) | |
| ebs (0.118301) |