Non-Coding RNA Search

Ss1.1-Pig4-TMW8056P23.5

Sequence:


               
               CTGGTTTGCCAAATTCTGTTAAGGCAGCGATATATTCAGTTTCTTATTTTGCATGCTTAG
ATCATGAACTTGGTGCCCTTTCAGAAAGAAAAAAAATATATATATGTCAAGTAGGTAATT
AATGCCATAGATTTTAAAGAGAGAAATGGTTTTCAGTTTTTTAAGATAAATTTTTAAAAA
CAAATTTTATGGCTGTCCTCTTAAGGGATTTAATATTCATCTCTAAGGGACTTGTACAAA
TTCCTCCTTTTTAGCTAACAGGGGAATAAGATTTTTTTTTAATCCACAGAAGAAAATGCT
AAAAATGGCTTTTATATACATACAGTTCATCTGGAAAATGATCTTAATCCTTACTGTTTT
GACTAGGCATATAAATATTTGGTATAAAGTAACTGGAATAGTTTATTACTTTTTCCCTTC
TGAAGTTTTAACTACATGCAAAAATACATATCATTAGATTCCTGTGGTGGATAATAATTT
CTTCAGATTCTAAAACAGGTATCTAGTGACTGCTTAATTGTTCCCAGTTTGCATCAAAAA
TGAACCGACAAATAATGGAAATGAGTAATGATATGAAAATGGTATGTAACTACATATTAC
TTGTTTCTGGTAATCAAGTCTTATTTTTAAAAAAGCCTATTGTTTTTGAGAATTGAGATA
TTCAAAACTTGTTAAAGCTTCTTCCTAAAAATAGAAAAGAAGAGGAGGTACTGTGTGTTT
AAAAGAAATTTTTTTTTAAATAAAGAATTCAGTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGTTTGCCAAATTCTGTTAAGGCAGCGATATATTCAGTTTCTTATTTTGCATGCTTAG
ATCATGAACTTGGTGCCCTTTCAGAAAGAAAAAAAATATATATATGTCAAGTAGGTAATT
AATGCCATAGATTTTAAAGAGAGAAATGGTTTTCAGTTTTTTAAGATAAATTTTTAAAAA
CAAATTTTATGGCTGTCCTCTTAAGGGATTTAATATTCATCTCTAAGGGACTTGTACAAA
TTCCTCCTTTTTAGCTAACAGGGGAATAAGATTTTTTTTTAATCCACAGAAGAAAATGCT
AAAAATGGCTTTTATATACATACAGTTCATCTGGAAAATGATCTTAATCCTTACTGTTTT
GACTAGGCATATAAATATTTGGTATAAAGTAACTGGAATAGTTTATTACTTTTTCCCTTC
TGAAGTTTTAACTACATGCAAAAATACATATCATTAGATTCCTGTGGTGGATAATAATTT
CTTCAGATTCTAAAACAGGTATCTAGTGACTGCTTAATTGTTCCCAGTTTGCATCAAAAA
TGAACCGACAAATAATGGAAATGAGTAATGATATGAAAATGGTATGTAACTACATATTAC
TTGTTTCTGGTAATCAAGTCTTATTTTTAAAAAAGCCTATTGTTTTTGAGAATTGAGATA
TTCAAAACTTGTTAAAGCTTCTTCCTAAAAATAGAAAAGAAGAGGAGGTACTGTGTGTTT
AAAAGAAATTTTTTTTTAAATAAAGAATTCAGTGTC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-221, gnl|bosTau2|chr14 (20856537-20856745)
               

               
               1-221, gnl|Hg17|chr8 (74866152-74865942)
               

               
               1-221, gnl|Mm7|chr1 (16757751-16757568)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-221, gnl|bosTau2|chr14 (20856537-20856745)
               

               
               1-221, gnl|Hg17|chr8 (74866152-74865942)
               

               
               1-221, gnl|Mm7|chr1 (16757751-16757568)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               eye (0.170503)
               

               
               ret (0.128733)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               ret (0.128733)
               

               
               ecc (0.115035)

	1-221, gnl\|bosTau2\|chr14 (20856537-20856745)
	1-221, gnl\|Hg17\|chr8 (74866152-74865942)
	1-221, gnl\|Mm7\|chr1 (16757751-16757568)