Ss1.1-Pig4-TMW8057A13.3
|
CGGTGCCTGGGGTCTTCACGAGGCGGGATGCCATTGTCACCCTTCCTGTCCGGACCACTT
TTTCCACCTTCTGTCTTGCATGCAGATCCCTCTCTGGCCAGCAGGGGGCGCAGGAGCCCA
GGAGATGGTCCCAGCGTGGCCAGCCTCGGAGGAAAGCTATTTACTAGTCCAATGGACTGT
TAGGTTGCCCAGCTGGCACTCCTTGGGGGACTGGTCAGTCCACAAGTATTCATTGAGCAC
TTAATGATACCCAGCATTGGACTGGGAATTCAGGGGAAATCCTGGAATATATGACCTCGG
ATTTGGAGCCTTGACAAGCCTTGTGGGAATGGAGATGCCCTGAGCTCTTATGAACTCTAA
ACCAGCACATGCCCTGTGGTTAGAGGATGAGGACCTGTTTCAGGAGTTGAAAAGGGAGGG
AGGGAGCTGAGTATGGGCTGGAGCCGTGAGAAAGCCTCATGGAGCATGTCGGAGAGAGGA
CCTGCAAAGATTGGTTCAGCGATCTTACGGTGGGGGATGGGAAGATAGTGACTGGTCTTA
ACCGTAGGAGGGCGATGCCCCCGCGGCGCTGAGGCTCTGAGGAGCTCAGTGCCGGATATG
AGGTGAGAGCAGGATAAGGGTTCAAGGCCATATCTGAAGATGGGCAGTCGTATCTGCCTT
CCTTTGTTTATCTTTCCATCCTTGCCTCCTCTTCCCATCTCTCTGCCATTACCTCAGTCA
GAAAGCATCAAAGCTGAAAAGAAACTTCAAGATTATTATTGTTGCCCAACCTTTTTTTAT
CTCTTTATCTCAAACTGTGTGAGTTTTATATCTGGCTTTGTTTTGCTCTCTCTGGCTCCT
GGAGTGGCTCCCTCCCTGAATCTCTGTCTATTATTCCTTGTCTTAGCATCTCTTTGTCTC
TAGTTCTTGTACCTGCCCTTGTGTGTTTCCTTCTCTCTCTGAAACCCTCAGTCATTCATT
CCCCTCAGGCTATTGTCTGTGAACCAAGGCTAGGTGTCAAAGGCACGGTTTGCCCTAGGA
ATGGATGGGTGGGGATTTTACCCTAGGAATCAAGATCCAATGTAGGGTCAGGAAATAAAG
GATAGGGATTAAAGAACCTCCCATTCAGTCAACAACTATTCATTCAGCACCTACTGTGTG
TTAGATGCTGTTGAGCAAAAGAGATCGGTAGGCTGGGTCCAGAAAAGGGAACAAAGGGTT
TGACTCAATTCAAGCAATGCTTTTGTTGGCAAACAGGTGGTGTTAATTTTTTCAAGGGCA
GACAAATGATCTCTCTGGCAACACTAACAATTTGCTTCTGTATTTAATTAAAAAATATCA
AAGCTTTTTCTATGATGAACAATATTGTATAATAAAATACAAAAATTGCCTTTCTTTGCT |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGGTGCCTGGGGTCTTCACGAGGCGGGATGCCATTGTCACCCTTCCTGTCCGGACCACTT
TTTCCACCTTCTGTCTTGCATGCAGATCCCTCTCTGGCCAGCAGGGGGCGCAGGAGCCCA
GGAGATGGTCCCAGCGTGGCCAGCCTCGGAGGAAAGCTATTTACTAGTCCAATGGACTGT
TAGGTTGCCCAGCTGGCACTCCTTGGGGGACTGGTCAGTCCACAAGTATTCATTGAGCAC
TTAATGATACCCAGCATTGGACTGGGAATTCAGGGGAAATCCTGGAATATATGACCTCGG
ATTTGGAGCCTTGACAAGCCTTGTGGGAATGGAGATGCCCTGAGCTCTTATGAACTCTAA
ACCAGCACATGCCCTGTGGTTAGAGGATGAGGACCTGTTTCAGGAGTTGAAAAGGGAGGG
AGGGAGCTGAGTATGGGCTGGAGCCGTGAGAAAGCCTCATGGAGCATGTCGGAGAGAGGA
CCTGCAAAGATTGGTTCAGCGATCTTACGGTGGGGGATGGGAAGATAGTGACTGGTCTTA
ACCGTAGGAGGGCGATGCCCCCGCGGCGCTGAGGCTCTGAGGAGCTCAGTGCCGGATATG
AGGTGAGAGCAGGATAAGGGTTCAAGGCCATATCTGAAGATGGGCAGTCGTATCTGCCTT
CCTTTGTTTATCTTTCCATCCTTGCCTCCTCTTCCCATCTCTCTGCCATTACCTCAGTCA
GAAAGCATCAAAGCTGAAAAGAAACTTCAAGATTATTATTGTTGCCCAACCTTTTTTTAT
CTCTTTATCTCAAACTGTGTGAGTTTTATATCTGGCTTTGTTTTGCTCTCTCTGGCTCCT
GGAGTGGCTCCCTCCCTGAATCTCTGTCTATTATTCCTTGTCTTAGCATCTCTTTGTCTC
TAGTTCTTGTACCTGCCCTTGTGTGTTTCCTTCTCTCTCTGAAACCCTCAGTCATTCATT
CCCCTCAGGCTATTGTCTGTGAACCAAGGCTAGGTGTCAAAGGCACGGTTTGCCCTAGGA
ATGGATGGGTGGGGATTTTACCCTAGGAATCAAGATCCAATGTAGGGTCAGGAAATAAAG
GATAGGGATTAAAGAACCTCCCATTCAGTCAACAACTATTCATTCAGCACCTACTGTGTG
TTAGATGCTGTTGAGCAAAAGAGATCGGTAGGCTGGGTCCAGAAAAGGGAACAAAGGGTT
TGACTCAATTCAAGCAATGCTTTTGTTGGCAAACAGGTGGTGTTAATTTTTTCAAGGGCA
GACAAATGATCTCTCTGGCAACACTAACAATTTGCTTCTGTATTTAATTAAAAAATATCA
AAGCTTTTTCTATGATGAACAATATTGTATAATAAAATACAAAAATTGCCTTTCTTTGCT |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
2-329, gnl|bosTau2|chr23 (14380766-14381098) |
|
2-329, gnl|canFam2|chr12 (12787967-12788297) |
|
2-329, gnl|echTel1|scaffold_315328 (83123-83429) |
|
2-329, gnl|hg17|chr6 (41103675-41103981) |
|
2-329, gnl|Hg17|chr6 (41103969-41103674) |
|
2-329, gnl|mm7|chr17 (46613059-46612774) |
|
2-329, gnl|monDom2|scaffold_42 (2566154-2565706) |
|
2-329, gnl|rheMac2|chr4 (40850660-40850978) |
|
2-329, gnl|rn3|chr9_random (181996-182294) |
| |
|
414-1000, gnl|bosTau2|chr23 (14381401-14382014) |
|
414-1000, gnl|Hg17|chr6 (41103569-41102969) |
| |
|
1047-1378, gnl|bosTau2|chr23 (14382305-14382632) |
|
1047-1378, gnl|canFam2|chr12 (12786802-12787115) |
|
1047-1378, gnl|echTel1|scaffold_315328 (82028-82339) |
|
1047-1378, gnl|hg17|chr6 (41102547-41102849) |
|
1047-1378, gnl|Hg17|chr6 (41102907-41102591) |
|
1047-1378, gnl|mm7|chr17 (46613919-46613707) |
|
1047-1378, gnl|panTro1|chr5 (41673782-41674084) |
|
1047-1378, gnl|rheMac2|chr4 (40849536-40849839) |
|
1047-1378, gnl|rn3|chr9_random (181071-181275) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
2-329, gnl|bosTau2|chr23 (14380766-14381098) |
|
2-329, gnl|canFam2|chr12 (12787967-12788297) |
|
2-329, gnl|echTel1|scaffold_315328 (83123-83429) |
|
2-329, gnl|hg17|chr6 (41103675-41103981) |
|
2-329, gnl|Hg17|chr6 (41103969-41103674) |
|
2-329, gnl|mm7|chr17 (46613059-46612774) |
|
2-329, gnl|monDom2|scaffold_42 (2566154-2565706) |
|
2-329, gnl|rheMac2|chr4 (40850660-40850978) |
|
2-329, gnl|rn3|chr9_random (181996-182294) |
| |
|
414-1000, gnl|bosTau2|chr23 (14381401-14382014) |
|
414-1000, gnl|Hg17|chr6 (41103569-41102969) |
| |
|
1047-1378, gnl|bosTau2|chr23 (14382305-14382632) |
|
1047-1378, gnl|canFam2|chr12 (12786802-12787115) |
|
1047-1378, gnl|echTel1|scaffold_315328 (82028-82339) |
|
1047-1378, gnl|hg17|chr6 (41102547-41102849) |
|
1047-1378, gnl|Hg17|chr6 (41102907-41102591) |
|
1047-1378, gnl|mm7|chr17 (46613919-46613707) |
|
1047-1378, gnl|panTro1|chr5 (41673782-41674084) |
|
1047-1378, gnl|rheMac2|chr4 (40849536-40849839) |
|
1047-1378, gnl|rn3|chr9_random (181071-181275) |
|
hlv (0.417769) |
|
duo (0.345602) |
|
jej (0.296765) |
|
mas (0.210305) |
|
col (0.195008) |
|
nje (0.16592) |
|
nco (0.161734) |
|
ste (0.135208) |
|
hlv (0.417769) |
|
duo (0.345602) |
|
jej (0.296765) |
|
mas (0.210305) |
|
col (0.195008) |
|
nje (0.16592) |
|
nco (0.161734) |
|
ste (0.135208) |
