Non-Coding RNA Search

Ss1.1-Pig4-TMW8057A14.3

Sequence:


               
               ATGGAAATAAATGCTCCTCTTTGGATTTGGAACTTCTACCAGTGGTGCTTTTAGGATTCT
TAGTGTTTTGTCCAGTCAAAGTCTTATTGTTGCTGTCATCTCGTCTCATCACGGAAGGTT
TAGCCTCTGTTTCCTGAGACTGTTTTGTAATATCCCTGTAATCCAGTTTAGAATCCTTGC
CTTGAGGGGCTGAGATCCTTCCACTGCCTCCTCTGGTAACACCGCTCTGAGGGGATTTCA
ATTTACTGCTGTTTTCAGATAAGCCTGACCTGGCACTTGTAGGTTTAAGTAGACCCAGTT
CCTTGGCTGAAAGTTTCTTTTCAGCATTTATTTCATCTCTGAGTACAGATTTTAGAAAAC
TTTTCTGGTTTTCAGATTTTGAAGCTGTCGCTTTTGCCTTTGTAGAAGAGGCCATACCAG
CCTTGATGCTTGATTTATTGCTAGATGCATTTGATGCAGCCAGCACACTAATTTTACTAG
TCTCATCAGGCTTATTGGCCTGACCCACTCCTTTATTTGGGCATGCCTTGGTCACTGAGT
TTTCTACAGGCTTTTCTTTCATTGCAGCCAAAATCTTCTCCAACTTCTCTGCAACCATCC
TATCATCATTCTTTTCAGCCTTTTCTGTTCCTAATTGTAGATCCATTCTGGTTTCCCTGG
TATTTAATTCATTCTCCTCCTTTTCATCCATGTTACTTTTTTCAGAAATTCCCACTGTGC
TCACTGCCTGCTCTTCCCCAGTGGAAATTCCTGGTACTAAGGCCACAACACAAGTAGATG
GTACTAATTCTGAAACAGTTTCATATTTGTCTACTTCAGTTACAGCTTCTATCACAGACT
GTGTAATCCCAGAAAGGAAATCTTCTGCTTCAGATGGAGAGTCTTCTAGAATTCCTTTGA
TGTTCCTTTCTTCGATAAATGCGCTATCAGACGTTGATAATTCTGTTTCAGTGTTAATAA
TTTCTGCTTCTTCCTTCTCAAGGTCACTGGTATATACCTGCTGATTTAAAACAGACTCCT
CTACATTTTCAGTGAATAAGTCAATACTGGCTGGAGTGGATGCCACAAGAGGAATTTCCA
CTTTGACCTCCTCCCCTTGCGTTTCAACTTCCAACATTTCAATAGCAAAGTAAGAGTCAC
ATAGTGCTTTTTCAGGTTCTTCCTCACAAAGCTCTTCCTGCTGTACAAAAGTTTCTGTTC
GAATGTTGGGAATAGATTCTTCTTCAACCTCACTAGGTTTAACAGAGGGACTATCAGTTG
CTGTTTGCACCTCACTTTCATCAACTGGACTGTTTTTCAAGTCAGGGCTTTTATTTCCTA
GTTCTGGGTCTTTCTCAGCTTCAGCCTCTGATGAGTCCATCTTTGGAGATAATGTGCAAG
TCAATACATGGTCACCTATGTTCTGCGGATTTTGTTTCAGAAAACTGTACATTGACTGAG
CAGATTCAGGACTATCTAACTGAAGAATTGCCTTGTTTTTATTACTCATGTACATGTGGT
GGTCCACTCTTCCAAACTGAAGTCCAATACAAAGTACACACTGAAGTCCATCTTCTGGTA
AGTTATCGAGATGAACAAATCTATTATAAATTGTATCTACATTTGCCTCTGGGTCATTTT
CTCTAATCAGGGTTGTAAATATAGCTTCCTCGTCTTTTAAATTCATGTTTTCAGGAGCCA
TACTTATTGAGAGTTGATTTCCATCCATTGATATTGGGAAGCAGGTATAAAATTTTACCA
TAGAATCTGCAGATTTTCTATTTATTTCTATAAATGCCTTTTTATGAGATGATAAAACCA
AAATATCCTTTAAACTACCAAATGGTTTTACTAGGCTGTGAACTTCTTCAATAGAATATC
CTTTATTGGGCAAGTCAGAAATAAGTACCACACACATTTCTTCTGTTTCCTTGTTAACTG
GTTCATTTTCTGTGGCCTCCGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGAAATAAATGCTCCTCTTTGGATTTGGAACTTCTACCAGTGGTGCTTTTAGGATTCT
TAGTGTTTTGTCCAGTCAAAGTCTTATTGTTGCTGTCATCTCGTCTCATCACGGAAGGTT
TAGCCTCTGTTTCCTGAGACTGTTTTGTAATATCCCTGTAATCCAGTTTAGAATCCTTGC
CTTGAGGGGCTGAGATCCTTCCACTGCCTCCTCTGGTAACACCGCTCTGAGGGGATTTCA
ATTTACTGCTGTTTTCAGATAAGCCTGACCTGGCACTTGTAGGTTTAAGTAGACCCAGTT
CCTTGGCTGAAAGTTTCTTTTCAGCATTTATTTCATCTCTGAGTACAGATTTTAGAAAAC
TTTTCTGGTTTTCAGATTTTGAAGCTGTCGCTTTTGCCTTTGTAGAAGAGGCCATACCAG
CCTTGATGCTTGATTTATTGCTAGATGCATTTGATGCAGCCAGCACACTAATTTTACTAG
TCTCATCAGGCTTATTGGCCTGACCCACTCCTTTATTTGGGCATGCCTTGGTCACTGAGT
TTTCTACAGGCTTTTCTTTCATTGCAGCCAAAATCTTCTCCAACTTCTCTGCAACCATCC
TATCATCATTCTTTTCAGCCTTTTCTGTTCCTAATTGTAGATCCATTCTGGTTTCCCTGG
TATTTAATTCATTCTCCTCCTTTTCATCCATGTTACTTTTTTCAGAAATTCCCACTGTGC
TCACTGCCTGCTCTTCCCCAGTGGAAATTCCTGGTACTAAGGCCACAACACAAGTAGATG
GTACTAATTCTGAAACAGTTTCATATTTGTCTACTTCAGTTACAGCTTCTATCACAGACT
GTGTAATCCCAGAAAGGAAATCTTCTGCTTCAGATGGAGAGTCTTCTAGAATTCCTTTGA
TGTTCCTTTCTTCGATAAATGCGCTATCAGACGTTGATAATTCTGTTTCAGTGTTAATAA
TTTCTGCTTCTTCCTTCTCAAGGTCACTGGTATATACCTGCTGATTTAAAACAGACTCCT
CTACATTTTCAGTGAATAAGTCAATACTGGCTGGAGTGGATGCCACAAGAGGAATTTCCA
CTTTGACCTCCTCCCCTTGCGTTTCAACTTCCAACATTTCAATAGCAAAGTAAGAGTCAC
ATAGTGCTTTTTCAGGTTCTTCCTCACAAAGCTCTTCCTGCTGTACAAAAGTTTCTGTTC
GAATGTTGGGAATAGATTCTTCTTCAACCTCACTAGGTTTAACAGAGGGACTATCAGTTG
CTGTTTGCACCTCACTTTCATCAACTGGACTGTTTTTCAAGTCAGGGCTTTTATTTCCTA
GTTCTGGGTCTTTCTCAGCTTCAGCCTCTGATGAGTCCATCTTTGGAGATAATGTGCAAG
TCAATACATGGTCACCTATGTTCTGCGGATTTTGTTTCAGAAAACTGTACATTGACTGAG
CAGATTCAGGACTATCTAACTGAAGAATTGCCTTGTTTTTATTACTCATGTACATGTGGT
GGTCCACTCTTCCAAACTGAAGTCCAATACAAAGTACACACTGAAGTCCATCTTCTGGTA
AGTTATCGAGATGAACAAATCTATTATAAATTGTATCTACATTTGCCTCTGGGTCATTTT
CTCTAATCAGGGTTGTAAATATAGCTTCCTCGTCTTTTAAATTCATGTTTTCAGGAGCCA
TACTTATTGAGAGTTGATTTCCATCCATTGATATTGGGAAGCAGGTATAAAATTTTACCA
TAGAATCTGCAGATTTTCTATTTATTTCTATAAATGCCTTTTTATGAGATGATAAAACCA
AAATATCCTTTAAACTACCAAATGGTTTTACTAGGCTGTGAACTTCTTCAATAGAATATC
CTTTATTGGGCAAGTCAGAAATAAGTACCACACACATTTCTTCTGTTTCCTTGTTAACTG
GTTCATTTTCTGTGGCCTCCGAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61860204|ref|XP_595843.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61860204|ref|XP_595843.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               48-602, - strand, RNAz p=0.99405
               

               
               760-879, + strand, RNAz p=0.530576

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               48-602, - strand, RNAz p=0.99405
               

               
               760-879, + strand, RNAz p=0.530576

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               48-1309, gnl|bosTau2|chr11 (10280098-10278843)
               

               
               48-1309, gnl|Hg17|chr2 (71562863-71561597)
               

               
               48-1309, gnl|Mm7|chr6 (84003064-84001805)
               


               
               1345-1475, gnl|bosTau2|chr11 (10270722-10270592)
               

               
               1345-1475, gnl|Hg17|chr2 (71547033-71546902)
               

               
               1345-1475, gnl|Mm7|chr6 (83994836-83994710)
               


               
               1648-1803, gnl|bosTau2|chr11 (10265905-10265747)
               

               
               1648-1803, gnl|canFam2|chr17 (54353164-54352862)
               

               
               1648-1803, gnl|dasNov1|scaffold_24654 (6359-6647)
               

               
               1648-1803, gnl|echTel1|scaffold_301626 (38649-38379)
               

               
               1648-1803, gnl|hg17|chr2 (71542597-71542882)
               

               
               1648-1803, gnl|Hg17|chr2 (71542784-71542626)
               

               
               1648-1803, gnl|loxAfr1|scaffold_8655 (35167-34875)
               

               
               1648-1803, gnl|mm7|chr6 (83991087-83991360)
               

               
               1648-1803, gnl|Mm7|chr6 (83991254-83991104)
               

               
               1648-1803, gnl|monDom2|scaffold_157 (661801-661544)
               

               
               1648-1803, gnl|oryCun1|scaffold_210300 (66830-66543)
               

               
               1648-1803, gnl|panTro1|chr12 (73871751-73872036)
               

               
               1648-1803, gnl|rheMac2|chr13 (71660880-71661164)
               

               
               1648-1803, gnl|rn3|chr4 (118405843-118406123)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               48-1309, gnl|bosTau2|chr11 (10280098-10278843)
               

               
               48-1309, gnl|Hg17|chr2 (71562863-71561597)
               

               
               48-1309, gnl|Mm7|chr6 (84003064-84001805)
               


               
               1345-1475, gnl|bosTau2|chr11 (10270722-10270592)
               

               
               1345-1475, gnl|Hg17|chr2 (71547033-71546902)
               

               
               1345-1475, gnl|Mm7|chr6 (83994836-83994710)
               


               
               1648-1803, gnl|bosTau2|chr11 (10265905-10265747)
               

               
               1648-1803, gnl|canFam2|chr17 (54353164-54352862)
               

               
               1648-1803, gnl|dasNov1|scaffold_24654 (6359-6647)
               

               
               1648-1803, gnl|echTel1|scaffold_301626 (38649-38379)
               

               
               1648-1803, gnl|hg17|chr2 (71542597-71542882)
               

               
               1648-1803, gnl|Hg17|chr2 (71542784-71542626)
               

               
               1648-1803, gnl|loxAfr1|scaffold_8655 (35167-34875)
               

               
               1648-1803, gnl|mm7|chr6 (83991087-83991360)
               

               
               1648-1803, gnl|Mm7|chr6 (83991254-83991104)
               

               
               1648-1803, gnl|monDom2|scaffold_157 (661801-661544)
               

               
               1648-1803, gnl|oryCun1|scaffold_210300 (66830-66543)
               

               
               1648-1803, gnl|panTro1|chr12 (73871751-73872036)
               

               
               1648-1803, gnl|rheMac2|chr13 (71660880-71661164)
               

               
               1648-1803, gnl|rn3|chr4 (118405843-118406123)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               nlu (0.191681)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

	48-602, - strand, RNAz p=0.99405
	760-879, + strand, RNAz p=0.530576

	48-1309, gnl\|bosTau2\|chr11 (10280098-10278843)
	48-1309, gnl\|Hg17\|chr2 (71562863-71561597)
	48-1309, gnl\|Mm7\|chr6 (84003064-84001805)

	1345-1475, gnl\|bosTau2\|chr11 (10270722-10270592)
	1345-1475, gnl\|Hg17\|chr2 (71547033-71546902)
	1345-1475, gnl\|Mm7\|chr6 (83994836-83994710)

	1648-1803, gnl\|bosTau2\|chr11 (10265905-10265747)
	1648-1803, gnl\|canFam2\|chr17 (54353164-54352862)
	1648-1803, gnl\|dasNov1\|scaffold_24654 (6359-6647)
	1648-1803, gnl\|echTel1\|scaffold_301626 (38649-38379)
	1648-1803, gnl\|hg17\|chr2 (71542597-71542882)
	1648-1803, gnl\|Hg17\|chr2 (71542784-71542626)
	1648-1803, gnl\|loxAfr1\|scaffold_8655 (35167-34875)
	1648-1803, gnl\|mm7\|chr6 (83991087-83991360)
	1648-1803, gnl\|Mm7\|chr6 (83991254-83991104)
	1648-1803, gnl\|monDom2\|scaffold_157 (661801-661544)
	1648-1803, gnl\|oryCun1\|scaffold_210300 (66830-66543)
	1648-1803, gnl\|panTro1\|chr12 (73871751-73872036)
	1648-1803, gnl\|rheMac2\|chr13 (71660880-71661164)
	1648-1803, gnl\|rn3\|chr4 (118405843-118406123)