Non-Coding RNA Search

Ss1.1-Pig4-TMW8057A18.3

Sequence:


               
               CAGGGCCAGCCTCCTGGCCGGACGTGGATTTGCTGTGCTTGCCCTGGCTTATTTTAGATT
TGAAGACCTCCCTGAATATTTGAATGATGTGAGCCTGGACTACTTTGAAGAAGCTGTGGA
CTTTATGTTACAGCATTCGAAGGTGAAAGGCCCTAGTGTTGGACTTCTTGGCTTCTCCAA
AGGAGGTGACCTGTGCCTCTCAATGGCCTCTTTCTTGAAGGGCATCACAGCCACTGTAGT
TATCAATGCCTGTGTGGCCAACACAATAGCTCCTCTGCGTTATAAGGATATGATTATTCC
TCATCTCAGCAGTGACCCGTGGAAATATACAATCAATGAGTCAGGCTTTTTAAATTTGAT
GGATATTTGGAACAATCCACTGGAGAAACCCAACCAACAAAGTCTTATTCCATTGGAGAA
GGCCCAGGGCCCCTTCCTGTTTATTGTTGGCATGGATGATCATAACTGGAAGAGTGAATT
CTATGCTCATGTAGCCTCTGAACGGTTACAAGCTCATGGGAAAGACAGACCCCAGATAAT
CTACTACCCAGGAACTGGTCATTGCATTGACCCACCTTATTTTCCTCTTTGTAGAGCCTC
TGTGCATGCAGTTTTGGACCAACCGATCTTCTATGGAGGTGAGCCAAAGGCTCACTCAAG
GGCACAGGTAGATGCATGGCAGCAAATCCAAACTTTCTTCCATAAACATCTCAATGGTAA
AAAATCTGTCAAGCCCAGCAAATTGTAACATTGTAACCATAAACCATATACTATTAATAA
AAATCATATTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGGCCAGCCTCCTGGCCGGACGTGGATTTGCTGTGCTTGCCCTGGCTTATTTTAGATT
TGAAGACCTCCCTGAATATTTGAATGATGTGAGCCTGGACTACTTTGAAGAAGCTGTGGA
CTTTATGTTACAGCATTCGAAGGTGAAAGGCCCTAGTGTTGGACTTCTTGGCTTCTCCAA
AGGAGGTGACCTGTGCCTCTCAATGGCCTCTTTCTTGAAGGGCATCACAGCCACTGTAGT
TATCAATGCCTGTGTGGCCAACACAATAGCTCCTCTGCGTTATAAGGATATGATTATTCC
TCATCTCAGCAGTGACCCGTGGAAATATACAATCAATGAGTCAGGCTTTTTAAATTTGAT
GGATATTTGGAACAATCCACTGGAGAAACCCAACCAACAAAGTCTTATTCCATTGGAGAA
GGCCCAGGGCCCCTTCCTGTTTATTGTTGGCATGGATGATCATAACTGGAAGAGTGAATT
CTATGCTCATGTAGCCTCTGAACGGTTACAAGCTCATGGGAAAGACAGACCCCAGATAAT
CTACTACCCAGGAACTGGTCATTGCATTGACCCACCTTATTTTCCTCTTTGTAGAGCCTC
TGTGCATGCAGTTTTGGACCAACCGATCTTCTATGGAGGTGAGCCAAAGGCTCACTCAAG
GGCACAGGTAGATGCATGGCAGCAAATCCAAACTTTCTTCCATAAACATCTCAATGGTAA
AAAATCTGTCAAGCCCAGCAAATTGTAACATTGTAACCATAAACCATATACTATTAATAA
AAATCATATTCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61826169|ref|XP_594692.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61826169|ref|XP_594692.1|

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               141-296, - strand, RNAz p=0.566319
               

               
               362-473, - strand, RNAz p=0.523708
               

               
               546-759, - strand, RNAz p=0.842564
               

               
               617-759, - strand, RNAz p=0.654869

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               141-296, - strand, RNAz p=0.566319
               

               
               362-473, - strand, RNAz p=0.523708
               

               
               546-759, - strand, RNAz p=0.842564
               

               
               617-759, - strand, RNAz p=0.654869

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               141-759, gnl|bosTau2|chr10 (60215136-60215754)
               

               
               141-759, gnl|canFam2|chr8 (49948478-49948900)
               

               
               141-759, gnl|danRer3|chr20 (37442444-37442027)
               

               
               141-759, gnl|dasNov1|scaffold_46889 (7053-7476)
               

               
               141-759, gnl|echTel1|scaffold_269247 (6509-6085)
               

               
               141-759, gnl|fr1|chrUn (100553799-100554204)
               

               
               141-759, gnl|galGal2|chr5 (3065159-3065577)
               

               
               141-759, gnl|hg17|chr14 (73155665-73156093)
               

               
               141-759, gnl|Hg17|chr14 (73155689-73156307)
               

               
               141-759, gnl|loxAfr1|scaffold_19092 (38919-38490)
               

               
               141-759, gnl|mm7|chr12 (82104853-82105272)
               

               
               141-759, gnl|Mm7|chr12 (82104874-82105486)
               

               
               141-759, gnl|monDom2|scaffold_8 (61488973-61488540)
               

               
               141-759, gnl|oryCun1|scaffold_169003 (2942-2512)
               

               
               141-759, gnl|panTro1|chr15 (72930775-72931195)
               

               
               141-759, gnl|rheMac2|chr7 (136718197-136718624)
               

               
               141-759, gnl|rn3|chr6 (108158215-108158641)
               

               
               141-759, gnl|tetNig1|chr14 (4831102-4830698)
               

               
               141-759, gnl|xenTro1|scaffold_33 (3236366-3235941)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               141-759, gnl|bosTau2|chr10 (60215136-60215754)
               

               
               141-759, gnl|canFam2|chr8 (49948478-49948900)
               

               
               141-759, gnl|danRer3|chr20 (37442444-37442027)
               

               
               141-759, gnl|dasNov1|scaffold_46889 (7053-7476)
               

               
               141-759, gnl|echTel1|scaffold_269247 (6509-6085)
               

               
               141-759, gnl|fr1|chrUn (100553799-100554204)
               

               
               141-759, gnl|galGal2|chr5 (3065159-3065577)
               

               
               141-759, gnl|hg17|chr14 (73155665-73156093)
               

               
               141-759, gnl|Hg17|chr14 (73155689-73156307)
               

               
               141-759, gnl|loxAfr1|scaffold_19092 (38919-38490)
               

               
               141-759, gnl|mm7|chr12 (82104853-82105272)
               

               
               141-759, gnl|Mm7|chr12 (82104874-82105486)
               

               
               141-759, gnl|monDom2|scaffold_8 (61488973-61488540)
               

               
               141-759, gnl|oryCun1|scaffold_169003 (2942-2512)
               

               
               141-759, gnl|panTro1|chr15 (72930775-72931195)
               

               
               141-759, gnl|rheMac2|chr7 (136718197-136718624)
               

               
               141-759, gnl|rn3|chr6 (108158215-108158641)
               

               
               141-759, gnl|tetNig1|chr14 (4831102-4830698)
               

               
               141-759, gnl|xenTro1|scaffold_33 (3236366-3235941)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nje (0.16592)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               pla (0.133672)

	141-296, - strand, RNAz p=0.566319
	362-473, - strand, RNAz p=0.523708
	546-759, - strand, RNAz p=0.842564
	617-759, - strand, RNAz p=0.654869

	141-759, gnl\|bosTau2\|chr10 (60215136-60215754)
	141-759, gnl\|canFam2\|chr8 (49948478-49948900)
	141-759, gnl\|danRer3\|chr20 (37442444-37442027)
	141-759, gnl\|dasNov1\|scaffold_46889 (7053-7476)
	141-759, gnl\|echTel1\|scaffold_269247 (6509-6085)
	141-759, gnl\|fr1\|chrUn (100553799-100554204)
	141-759, gnl\|galGal2\|chr5 (3065159-3065577)
	141-759, gnl\|hg17\|chr14 (73155665-73156093)
	141-759, gnl\|Hg17\|chr14 (73155689-73156307)
	141-759, gnl\|loxAfr1\|scaffold_19092 (38919-38490)
	141-759, gnl\|mm7\|chr12 (82104853-82105272)
	141-759, gnl\|Mm7\|chr12 (82104874-82105486)
	141-759, gnl\|monDom2\|scaffold_8 (61488973-61488540)
	141-759, gnl\|oryCun1\|scaffold_169003 (2942-2512)
	141-759, gnl\|panTro1\|chr15 (72930775-72931195)
	141-759, gnl\|rheMac2\|chr7 (136718197-136718624)
	141-759, gnl\|rn3\|chr6 (108158215-108158641)
	141-759, gnl\|tetNig1\|chr14 (4831102-4830698)
	141-759, gnl\|xenTro1\|scaffold_33 (3236366-3235941)