Ss1.1-Pig4-TMW8057A21.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAGCATGGATGCTGGTTTATCATTCATCATGGCTAACCATGGAAAAGTGAAAGAAAATG ATATTGTGTTTGATCCCTTTGTTGGAACAGCAATGTATTCTAAATTGGGTCTTCTCAAAA CTCACTCTAACCAAATGGATAAGGTTCTGTTTAAGGAAGCGCAGGAAAGCTTTTCTGTTC CCCTTGACAACTAGTTCTTCTAGGTGGCCTTCTGATAGCATCTGCTCATTTTGGTGCATA TGTATGTGGGACAGACATAGACTACAACACCATTCATGGCTTGGGAAAGGCTAGTAGGAA AAACCAGAAATGGAGAGGACCAGATGAAAACATTAGGGCAAATCTTCGTCAATACGGTTT AGAGAAGTATTACCTTGATGTCCTGGTTTCAGATGCATCTAAACCTTCCTGGAGGAAGGG CGCATATTTTGATGCAATCATCACTGATCCTCCATATGGTATTAGAGAATCTACAAGAAG AACAGGGTCACAGAAGGAAATACCAAAGAGCATAGAAAAATGTCCAGAAAGCCATGTTCC TGTTTCCTTGAGTTATCATCTGAGTGATATGTTTTTTGACCTGTTAAACTTTGCAGCTGA AACTCTCATATTAGGTGGAAGACTAGTCTACTGGTTACCAGTGTACACACCAGAATACAC TGAAGAGATGGTACCTTGGCACCCTTGCTTGAAACTCATCAGCAACTGTGAGCAGAAGCT TTCTAGTCATACATCGAGGCGCTTGATAACAATGGAAAAAGTGAAGGAATTTGAGAACCG GGACCAGTATTCACATCTGCTGAGTGATCACTTTCTGCCATACCAAGGTCATAATTCCTT CCGTGAGAAATATTTCAGTGGGGTAACAAAAAGGATTGCCAAAGAAGAAAAGTCTAGCCA GGAGTGAAAATTAAGATTTTGACAATGGAGAAAGAATAAGGATTCGATAGAAAAGACATC TGGGATGTGACCTTTCGTATAAGATACAGAAACCATGTACTGTTTTGAATAATTTTATAT AACATAATACATGCCACAAAGTCAGCAATTCTTTTAGTGTTAGCTTTGTTTTATAGACTG TTTTGTTGTATGTGGTCTCTTGAACTTAATTTATATTTATATTTTCAAGTATTATGGAAA TTGAAAACAGTTATATTTTTGGTAATTAATTTACAAAGGGAACTAATAGTATTGATTTTT TAAACAGATATGTTATGTATATGCTGGATATGTTATAGGCCGTTAATAGTGGTTGAGAGT TTATTCATTAAGTAGATGTTTTTAATTTGGTCTTTGATTGTAATTGATTTACATTTTCAC TAATAAAACTTATTGAGAATTCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAGCATGGATGCTGGTTTATCATTCATCATGGCTAACCATGGAAAAGTGAAAGAAAATG ATATTGTGTTTGATCCCTTTGTTGGAACAGCAATGTATTCTAAATTGGGTCTTCTCAAAA CTCACTCTAACCAAATGGATAAGGTTCTGTTTAAGGAAGCGCAGGAAAGCTTTTCTGTTC CCCTTGACAACTAGTTCTTCTAGGTGGCCTTCTGATAGCATCTGCTCATTTTGGTGCATA TGTATGTGGGACAGACATAGACTACAACACCATTCATGGCTTGGGAAAGGCTAGTAGGAA AAACCAGAAATGGAGAGGACCAGATGAAAACATTAGGGCAAATCTTCGTCAATACGGTTT AGAGAAGTATTACCTTGATGTCCTGGTTTCAGATGCATCTAAACCTTCCTGGAGGAAGGG CGCATATTTTGATGCAATCATCACTGATCCTCCATATGGTATTAGAGAATCTACAAGAAG AACAGGGTCACAGAAGGAAATACCAAAGAGCATAGAAAAATGTCCAGAAAGCCATGTTCC TGTTTCCTTGAGTTATCATCTGAGTGATATGTTTTTTGACCTGTTAAACTTTGCAGCTGA AACTCTCATATTAGGTGGAAGACTAGTCTACTGGTTACCAGTGTACACACCAGAATACAC TGAAGAGATGGTACCTTGGCACCCTTGCTTGAAACTCATCAGCAACTGTGAGCAGAAGCT TTCTAGTCATACATCGAGGCGCTTGATAACAATGGAAAAAGTGAAGGAATTTGAGAACCG GGACCAGTATTCACATCTGCTGAGTGATCACTTTCTGCCATACCAAGGTCATAATTCCTT CCGTGAGAAATATTTCAGTGGGGTAACAAAAAGGATTGCCAAAGAAGAAAAGTCTAGCCA GGAGTGAAAATTAAGATTTTGACAATGGAGAAAGAATAAGGATTCGATAGAAAAGACATC TGGGATGTGACCTTTCGTATAAGATACAGAAACCATGTACTGTTTTGAATAATTTTATAT AACATAATACATGCCACAAAGTCAGCAATTCTTTTAGTGTTAGCTTTGTTTTATAGACTG TTTTGTTGTATGTGGTCTCTTGAACTTAATTTATATTTATATTTTCAAGTATTATGGAAA TTGAAAACAGTTATATTTTTGGTAATTAATTTACAAAGGGAACTAATAGTATTGATTTTT TAAACAGATATGTTATGTATATGCTGGATATGTTATAGGCCGTTAATAGTGGTTGAGAGT TTATTCATTAAGTAGATGTTTTTAATTTGGTCTTTGATTGTAATTGATTTACATTTTCAC TAATAAAACTTATTGAGAATTCCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 1-107, gnl|bosTau2|chr9 (12754106-12754000) | |
| 1-107, gnl|canFam2|chr1 (67931683-67931845) | |
| 1-107, gnl|danRer3|chr16 (40790902-40791064) | |
| 1-107, gnl|dasNov1|scaffold_5884 (50600-50438) | |
| 1-107, gnl|echTel1|scaffold_311557 (237470-237307) | |
| 1-107, gnl|fr1|chrUn (55511422-55511584) | |
| 1-107, gnl|galGal2|chr3 (58135950-58135782) | |
| 1-107, gnl|hg17|chr6 (126362293-126362455) | |
| 1-107, gnl|Hg17|chr6 (126362363-126362467) | |
| 1-107, gnl|loxAfr1|scaffold_28471 (31673-31835) | |
| 1-107, gnl|mm7|chr10 (30368244-30368082) | |
| 1-107, gnl|Mm7|chr10 (30368172-30368066) | |
| 1-107, gnl|monDom2|scaffold_0 (87931565-87931403) | |
| 1-107, gnl|oryCun1|scaffold_148420 (5646-5484) | |
| 1-107, gnl|panTro1|chr5 (128886575-128886737) | |
| 1-107, gnl|rheMac2|chr4 (137941844-137941682) | |
| 1-107, gnl|rn3|chr1 (27753701-27753863) | |
| 1-107, gnl|tetNig1|chr8 (3313005-3313166) | |
| 1-107, gnl|xenTro1|scaffold_22 (89076-89238) | |
| 202-1040, gnl|bosTau2|chr28 (22437189-22436367) | |
| 202-1040, gnl|Hg17|chr22 (34223309-34222284) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-107, gnl|bosTau2|chr9 (12754106-12754000) | |
| 1-107, gnl|canFam2|chr1 (67931683-67931845) | |
| 1-107, gnl|danRer3|chr16 (40790902-40791064) | |
| 1-107, gnl|dasNov1|scaffold_5884 (50600-50438) | |
| 1-107, gnl|echTel1|scaffold_311557 (237470-237307) | |
| 1-107, gnl|fr1|chrUn (55511422-55511584) | |
| 1-107, gnl|galGal2|chr3 (58135950-58135782) | |
| 1-107, gnl|hg17|chr6 (126362293-126362455) | |
| 1-107, gnl|Hg17|chr6 (126362363-126362467) | |
| 1-107, gnl|loxAfr1|scaffold_28471 (31673-31835) | |
| 1-107, gnl|mm7|chr10 (30368244-30368082) | |
| 1-107, gnl|Mm7|chr10 (30368172-30368066) | |
| 1-107, gnl|monDom2|scaffold_0 (87931565-87931403) | |
| 1-107, gnl|oryCun1|scaffold_148420 (5646-5484) | |
| 1-107, gnl|panTro1|chr5 (128886575-128886737) | |
| 1-107, gnl|rheMac2|chr4 (137941844-137941682) | |
| 1-107, gnl|rn3|chr1 (27753701-27753863) | |
| 1-107, gnl|tetNig1|chr8 (3313005-3313166) | |
| 1-107, gnl|xenTro1|scaffold_22 (89076-89238) | |
| 202-1040, gnl|bosTau2|chr28 (22437189-22436367) | |
| 202-1040, gnl|Hg17|chr22 (34223309-34222284) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| ret (0.3862) | |
| rec (0.346141) | |
| sag (0.182715) | |
| nco (0.161734) | |
| liv (0.146284) | |
| ste (0.135208) | |
| thg (0.126791) | |
| med (0.116252) | |
| eje (0.0988338) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ret (0.3862) | |
| rec (0.346141) | |
| sag (0.182715) | |
| nco (0.161734) | |
| liv (0.146284) | |
| ste (0.135208) | |
| thg (0.126791) | |
| med (0.116252) | |
| eje (0.0988338) |