Non-Coding RNA Search

Ss1.1-Pig4-TMW8057C24.5

Sequence:


               
               GTCCTGTAGAGGCGGTGGGAGCGATGAGGGCACTGAGGCTGTGGTAGCCGTTGTGTGAAG
ATGGAGTTTCCCGGAGGAAGTGACAATTACCTGACGATCACTGGACCCTCGCACCCCTTC
CTGTCAGGGGCCGAGACGTTCCATACACCAAGCTTAGGCGATGAGGAGTTTGAAATCCCA
CCCATCTCCTTGGATTCTGATCCCTCACTGGCTGTCTCGGATGTGGTTGGACACTTTGAT
GACCTGGCAGACCCTTCCTCCTCTCAGGATGGCAGCTTTTCAGCCCAATATGGGGTCCAG
ACATTGGACATGCCTGTGGGCATGACCCATGGCTTGATGGAGCAGGGCGGGGGGCTCCTG
AGTGGGGGCTTGACCATGGACTTGGATCATTCTATAGGAACTCAGTATAGCGCCAACCCA
CCTGTTACAATTGATGTACCAATGACAGACATGACATCTGGCTTGATGGGGCATAGCCAG
TTGACCACCATTGATCAGTCAGAACTGAGTTCTCAACTTGGTTTGAGCTTAGGGGGTGGC
ACCATCCTGCCACCTGCCCAGTCACCTGAGGATCGTCTTTCAACCACCCCTTCACCTACT
AGTTCACTTCATGAGGATGGTGTTGAGGAATTCCGGAGGCAACTTCCCAGCCAGAAGACA
GTTGTGGTGGAAGCAGGGAAAAAGCAGAAGGCTCCAAAGAAGAGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCTGTAGAGGCGGTGGGAGCGATGAGGGCACTGAGGCTGTGGTAGCCGTTGTGTGAAG
ATGGAGTTTCCCGGAGGAAGTGACAATTACCTGACGATCACTGGACCCTCGCACCCCTTC
CTGTCAGGGGCCGAGACGTTCCATACACCAAGCTTAGGCGATGAGGAGTTTGAAATCCCA
CCCATCTCCTTGGATTCTGATCCCTCACTGGCTGTCTCGGATGTGGTTGGACACTTTGAT
GACCTGGCAGACCCTTCCTCCTCTCAGGATGGCAGCTTTTCAGCCCAATATGGGGTCCAG
ACATTGGACATGCCTGTGGGCATGACCCATGGCTTGATGGAGCAGGGCGGGGGGCTCCTG
AGTGGGGGCTTGACCATGGACTTGGATCATTCTATAGGAACTCAGTATAGCGCCAACCCA
CCTGTTACAATTGATGTACCAATGACAGACATGACATCTGGCTTGATGGGGCATAGCCAG
TTGACCACCATTGATCAGTCAGAACTGAGTTCTCAACTTGGTTTGAGCTTAGGGGGTGGC
ACCATCCTGCCACCTGCCCAGTCACCTGAGGATCGTCTTTCAACCACCCCTTCACCTACT
AGTTCACTTCATGAGGATGGTGTTGAGGAATTCCGGAGGCAACTTCCCAGCCAGAAGACA
GTTGTGGTGGAAGCAGGGAAAAAGCAGAAGGCTCCAAAGAAGAGAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6P1U6_XENTR

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6P1U6_XENTR

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               457-616, - strand, RNAz p=0.947759

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               457-616, - strand, RNAz p=0.947759

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               378-639, gnl|bosTau2|chr10 (16043788-16044049)
               

               
               378-639, gnl|Hg17|chr14 (21026588-21026849)
               

               
               378-639, gnl|Mm7|chr14 (47620408-47620669)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               378-639, gnl|bosTau2|chr10 (16043788-16044049)
               

               
               378-639, gnl|Hg17|chr14 (21026588-21026849)
               

               
               378-639, gnl|Mm7|chr14 (47620408-47620669)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nep (0.183925)
               

               
               nco (0.161734)
               

               
               clu (0.119646)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               nco (0.161734)
               

               
               clu (0.119646)

	378-639, gnl\|bosTau2\|chr10 (16043788-16044049)
	378-639, gnl\|Hg17\|chr14 (21026588-21026849)
	378-639, gnl\|Mm7\|chr14 (47620408-47620669)