Ss1.1-Pig4-TMW8057D20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGCCGCCCCCGGCTTGTCTGTCCGCGGCCGCCCGCGCGCCGGCGTGATCCCGCCGGGGC TGTGCGTGCTCCCCGGCCGCGCGCCATGGGCAGTCCCCGCTCGGCGCTGAGCTGCCTGCT GTTGCACTTGCTGGTTCTCTGCCTCCAAGCCCAGGTAACTGTTCAGTCCTCACCTAATTT TACACAGCATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAGCCGCCGCCTCATCCG GACCTACCAACTCTACAGTCGCACCAGCGGGAAGCACGTGCAGGTCCTGGCCAACAAGCG CATCAACGCCATGGCAGAAGATGGGGACCCCTTCGCAAAGCTCATTGTGGAGACAGATAC CTTTGGGAGCCGGGTTCGAGTCCGAGGAGCTGAAACGGGCCTCTACATCTGCATGAACAA GAAGGGGAAGCTGATTGCCAAGAGCAACGGCAAAGGCAAGGATTGCGTGTTTACGGAGAT CGTGCTGGAGAACAACTACACAGCCCTGCAGAACGCCAAGTACGAGGGCTGGTACATGGC CTTCACGCGCAAGGGCCGGCCCCGTAAGGGCTCCAAGACGCGGCAGCACCAGCGCGAGGT CCACTTCATGAAGCGGCTGCCCCGCGGCCACCACACCACCGAGCAGAGCCTGCGCTTCGA GTTCCTCAACTACCCGCCCTTCACGCGCAGCCTGCGCGGCAGCCAGAGGACTTGGGCCCC CGAGCCCCGATAGGCCCTGCCCGGCCCCTCCGCGCCGCTCCCCGCGCCGGCGAGCTCGGC TCTGCCGCAAGAGGTCTGCGCTGCTGAAGGCCGGGGAGGAGCTGGGGGAGCCCGGCTCCC GTTGTCGATAATTGTTTGCTGTTGGGTTTTTTGTCGTTGTTGTTTTTTTAAACAAAAGAG AGGCTCTATTTTTGTATTCATAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGCCGCCCCCGGCTTGTCTGTCCGCGGCCGCCCGCGCGCCGGCGTGATCCCGCCGGGGC TGTGCGTGCTCCCCGGCCGCGCGCCATGGGCAGTCCCCGCTCGGCGCTGAGCTGCCTGCT GTTGCACTTGCTGGTTCTCTGCCTCCAAGCCCAGGTAACTGTTCAGTCCTCACCTAATTT TACACAGCATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAGCCGCCGCCTCATCCG GACCTACCAACTCTACAGTCGCACCAGCGGGAAGCACGTGCAGGTCCTGGCCAACAAGCG CATCAACGCCATGGCAGAAGATGGGGACCCCTTCGCAAAGCTCATTGTGGAGACAGATAC CTTTGGGAGCCGGGTTCGAGTCCGAGGAGCTGAAACGGGCCTCTACATCTGCATGAACAA GAAGGGGAAGCTGATTGCCAAGAGCAACGGCAAAGGCAAGGATTGCGTGTTTACGGAGAT CGTGCTGGAGAACAACTACACAGCCCTGCAGAACGCCAAGTACGAGGGCTGGTACATGGC CTTCACGCGCAAGGGCCGGCCCCGTAAGGGCTCCAAGACGCGGCAGCACCAGCGCGAGGT CCACTTCATGAAGCGGCTGCCCCGCGGCCACCACACCACCGAGCAGAGCCTGCGCTTCGA GTTCCTCAACTACCCGCCCTTCACGCGCAGCCTGCGCGGCAGCCAGAGGACTTGGGCCCC CGAGCCCCGATAGGCCCTGCCCGGCCCCTCCGCGCCGCTCCCCGCGCCGGCGAGCTCGGC TCTGCCGCAAGAGGTCTGCGCTGCTGAAGGCCGGGGAGGAGCTGGGGGAGCCCGGCTCCC GTTGTCGATAATTGTTTGCTGTTGGGTTTTTTGTCGTTGTTGTTTTTTTAAACAAAAGAG AGGCTCTATTTTTGTATTCATAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 481-640, - strand, RNAz p=0.692145 | |
| 819-919, - strand, RNAz p=0.999158 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 481-640, - strand, RNAz p=0.692145 | |
| 819-919, - strand, RNAz p=0.999158 |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 153-340, gnl|bosTau2|chr26 (16641826-16641639) | |
| 153-340, gnl|canFam2|chr25 (38185801-38185615) | |
| 153-340, gnl|canFam2|chr28 (17362946-17363123) | |
| 153-340, gnl|danRer3|chr13 (29132079-29131902) | |
| 153-340, gnl|danRer3|chr8 (43315418-43315229) | |
| 153-340, gnl|dasNov1|scaffold_106015 (6135-5987) | |
| 153-340, gnl|dasNov1|scaffold_106015 (5999-6136) | |
| 153-340, gnl|echTel1|scaffold_315161 (3243-3066) | |
| 153-340, gnl|echTel1|scaffold_315161 (3066-3243) | |
| 153-340, gnl|fr1|chrUn (232607653-232607467) | |
| 153-340, gnl|fr1|chrUn (172903442-172903619) | |
| 153-340, gnl|galGal2|chr6 (21818210-21818387) | |
| 153-340, gnl|galGal2|chr6 (21818387-21818210) | |
| 153-340, gnl|hg17|chr10 (103524475-103524652) | |
| 153-340, gnl|Hg17|chr10 (103524661-103524474) | |
| 153-340, gnl|hg17|chr8 (21959568-21959754) | |
| 153-340, gnl|loxAfr1|scaffold_149972 (515-329) | |
| 153-340, gnl|loxAfr1|scaffold_149972 (329-503) | |
| 153-340, gnl|mm7|chr14 (65283468-65283282) | |
| 153-340, gnl|mm7|chr19 (45638398-45638575) | |
| 153-340, gnl|Mm7|chr19 (45638584-45638397) | |
| 153-340, gnl|monDom2|scaffold_1 (73630645-73630459) | |
| 153-340, gnl|monDom2|scaffold_14 (61704612-61704435) | |
| 153-340, gnl|panTro1|chr7 (22891560-22891746) | |
| 153-340, gnl|panTro1|chr8 (105280886-105281063) | |
| 153-340, gnl|rheMac2|chr8 (21969486-21969672) | |
| 153-340, gnl|rheMac2|chr8 (21969672-21969498) | |
| 153-340, gnl|rn3|chr1 (251216101-251216278) | |
| 153-340, gnl|rn3|chr15 (51056504-51056318) | |
| 153-340, gnl|tetNig1|chrUn_random (90988962-90989148) | |
| 153-340, gnl|tetNig1|chrUn_random (54002694-54002872) | |
| 153-340, gnl|xenTro1|scaffold_708 (637398-637587) | |
| 153-340, gnl|xenTro1|scaffold_708 (637587-637410) | |
| 441-919, gnl|bosTau2|chr26 (16637566-16637083) | |
| 441-919, gnl|Hg17|chr10 (103520368-103519858) | |
| 441-919, gnl|Mm7|chr19 (45634185-45633703) | |
| 449-623, gnl|bosTau2|chr20 (2507876-2507703) | |
| 449-623, gnl|canFam2|chr4 (43911014-43910818) | |
| 449-623, gnl|danRer3|chr10 (14796079-14795879) | |
| 449-623, gnl|dasNov1|scaffold_140592 (4234-4425) | |
| 449-623, gnl|fr1|chrUn (109368176-109367981) | |
| 449-623, gnl|galGal2|chr13 (6348591-6348782) | |
| 449-623, gnl|hg17|chr5 (170816109-170816325) | |
| 449-623, gnl|Hg17|chr5 (170816154-170816327) | |
| 449-623, gnl|loxAfr1|scaffold_9091 (4674-4890) | |
| 449-623, gnl|mm7|chr11 (33070067-33069866) | |
| 449-623, gnl|Mm7|chr11 (33070035-33069862) | |
| 449-623, gnl|monDom2|scaffold_6 (29662657-29662450) | |
| 449-623, gnl|oryCun1|scaffold_7890 (457-243) | |
| 449-623, gnl|panTro1|chr4 (178083598-178083814) | |
| 449-623, gnl|rheMac2|chr6 (167838822-167839039) | |
| 449-623, gnl|rn3|chr1 (251211922-251211707) | |
| 449-623, gnl|tetNig1|chr1 (131021-131216) | |
| 449-623, gnl|xenTro1|scaffold_708 (643159-643357) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 153-340, gnl|bosTau2|chr26 (16641826-16641639) | |
| 153-340, gnl|canFam2|chr25 (38185801-38185615) | |
| 153-340, gnl|canFam2|chr28 (17362946-17363123) | |
| 153-340, gnl|danRer3|chr13 (29132079-29131902) | |
| 153-340, gnl|danRer3|chr8 (43315418-43315229) | |
| 153-340, gnl|dasNov1|scaffold_106015 (6135-5987) | |
| 153-340, gnl|dasNov1|scaffold_106015 (5999-6136) | |
| 153-340, gnl|echTel1|scaffold_315161 (3243-3066) | |
| 153-340, gnl|echTel1|scaffold_315161 (3066-3243) | |
| 153-340, gnl|fr1|chrUn (232607653-232607467) | |
| 153-340, gnl|fr1|chrUn (172903442-172903619) | |
| 153-340, gnl|galGal2|chr6 (21818210-21818387) | |
| 153-340, gnl|galGal2|chr6 (21818387-21818210) | |
| 153-340, gnl|hg17|chr10 (103524475-103524652) | |
| 153-340, gnl|Hg17|chr10 (103524661-103524474) | |
| 153-340, gnl|hg17|chr8 (21959568-21959754) | |
| 153-340, gnl|loxAfr1|scaffold_149972 (515-329) | |
| 153-340, gnl|loxAfr1|scaffold_149972 (329-503) | |
| 153-340, gnl|mm7|chr14 (65283468-65283282) | |
| 153-340, gnl|mm7|chr19 (45638398-45638575) | |
| 153-340, gnl|Mm7|chr19 (45638584-45638397) | |
| 153-340, gnl|monDom2|scaffold_1 (73630645-73630459) | |
| 153-340, gnl|monDom2|scaffold_14 (61704612-61704435) | |
| 153-340, gnl|panTro1|chr7 (22891560-22891746) | |
| 153-340, gnl|panTro1|chr8 (105280886-105281063) | |
| 153-340, gnl|rheMac2|chr8 (21969486-21969672) | |
| 153-340, gnl|rheMac2|chr8 (21969672-21969498) | |
| 153-340, gnl|rn3|chr1 (251216101-251216278) | |
| 153-340, gnl|rn3|chr15 (51056504-51056318) | |
| 153-340, gnl|tetNig1|chrUn_random (90988962-90989148) | |
| 153-340, gnl|tetNig1|chrUn_random (54002694-54002872) | |
| 153-340, gnl|xenTro1|scaffold_708 (637398-637587) | |
| 153-340, gnl|xenTro1|scaffold_708 (637587-637410) | |
| 441-919, gnl|bosTau2|chr26 (16637566-16637083) | |
| 441-919, gnl|Hg17|chr10 (103520368-103519858) | |
| 441-919, gnl|Mm7|chr19 (45634185-45633703) | |
| 449-623, gnl|bosTau2|chr20 (2507876-2507703) | |
| 449-623, gnl|canFam2|chr4 (43911014-43910818) | |
| 449-623, gnl|danRer3|chr10 (14796079-14795879) | |
| 449-623, gnl|dasNov1|scaffold_140592 (4234-4425) | |
| 449-623, gnl|fr1|chrUn (109368176-109367981) | |
| 449-623, gnl|galGal2|chr13 (6348591-6348782) | |
| 449-623, gnl|hg17|chr5 (170816109-170816325) | |
| 449-623, gnl|Hg17|chr5 (170816154-170816327) | |
| 449-623, gnl|loxAfr1|scaffold_9091 (4674-4890) | |
| 449-623, gnl|mm7|chr11 (33070067-33069866) | |
| 449-623, gnl|Mm7|chr11 (33070035-33069862) | |
| 449-623, gnl|monDom2|scaffold_6 (29662657-29662450) | |
| 449-623, gnl|oryCun1|scaffold_7890 (457-243) | |
| 449-623, gnl|panTro1|chr4 (178083598-178083814) | |
| 449-623, gnl|rheMac2|chr6 (167838822-167839039) | |
| 449-623, gnl|rn3|chr1 (251211922-251211707) | |
| 449-623, gnl|tetNig1|chr1 (131021-131216) | |
| 449-623, gnl|xenTro1|scaffold_708 (643159-643357) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eye (0.170503) | |
| hyp (0.142837) |