Ss1.1-Pig4-TMW8057E03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACTTAATGATTCAGCTGGATCAACATGAAGGATCTTATTTGTCAATTTGTAAGCACTAC AGAGCAATCTATGACACTCCGTGTATACAGGCAGAAAGTGAAAAGTGGCAACAGGCCCTG AAAAGTGTTGTCCTTTATGTTATCTTGGCTCCTTTTGACAATGAACAGTCAGATTTGGTT CACCGAATAAGTGGTGACAAGAAATTAGAAGAAATCCCTAAATACAAGGATCTTTTAAAG CTTTTTACCACAATGGAGTTGATGCGATGGTCCACACTTGTTGAAGATTATGGAATGGAA TTAAGAAAAGGTTCTCTGGAGTCTCCCGCAACTGACGTTTTTGGTTATACGGAAGAAGGC GAAAAAAGGTGGAAAGACTTGAAGAACAGAGTTGTTGAACATAATATTAGAATAATGGCC AAGTATTACACGAGGATAACAATGAAGAGGATGGCACAGCTTCTGGATCTGTCTGTTGAT GAGTCAGAGGCTTTTCTCTCGAATCTAGTAGTTAACAAGACCATCTTTGCTAAAGTAGAC AGATTGGCAGGAATTATCAACTTCCAGAGACCCAAGGATCCAAATAATTTATTAAATGAC TGGTCTCAGAAACTGAACTCATTGATGTCTTTAGTTAACAAAACCACACACCTCATAGCC AAAGAGGAGATGATACATAATCTACAATAGGGGTCTTCATGCCCTTACTGCTTTTAGAAA AGAGTTAAAATTGGAAGTCATTTAAAAAAAAACAAAAAGACTTTTATGGTGTATATGTTG TTGTTTTTTTTTTCTTTGCTCAGCTCTTTTGTCTAAAATTTAAAAGATAGTGAATACGTT TGAGGCCCCTTTCAACCTTTCAATTCCTCAGTTTCATTGTTAACTTTGCATTTGCAATTG GTGCATTTCTATTGTCTGAGTACTCAAAAAATTGTCATAACTTGCCTACATATGTTTTTC TGTCATTTGAAACCTTTTTAGCTATTACTTGTTTTCATTCAGCTAACAACCATAATTATA ATAAAAGCAGCATATGCACATTTAAAAAAAAAAAAAACCTGTGTTTCTAAACATTTTGTG AGATAGTGATTTAAGTGTTTTTAAAATAAAATAAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACTTAATGATTCAGCTGGATCAACATGAAGGATCTTATTTGTCAATTTGTAAGCACTAC AGAGCAATCTATGACACTCCGTGTATACAGGCAGAAAGTGAAAAGTGGCAACAGGCCCTG AAAAGTGTTGTCCTTTATGTTATCTTGGCTCCTTTTGACAATGAACAGTCAGATTTGGTT CACCGAATAAGTGGTGACAAGAAATTAGAAGAAATCCCTAAATACAAGGATCTTTTAAAG CTTTTTACCACAATGGAGTTGATGCGATGGTCCACACTTGTTGAAGATTATGGAATGGAA TTAAGAAAAGGTTCTCTGGAGTCTCCCGCAACTGACGTTTTTGGTTATACGGAAGAAGGC GAAAAAAGGTGGAAAGACTTGAAGAACAGAGTTGTTGAACATAATATTAGAATAATGGCC AAGTATTACACGAGGATAACAATGAAGAGGATGGCACAGCTTCTGGATCTGTCTGTTGAT GAGTCAGAGGCTTTTCTCTCGAATCTAGTAGTTAACAAGACCATCTTTGCTAAAGTAGAC AGATTGGCAGGAATTATCAACTTCCAGAGACCCAAGGATCCAAATAATTTATTAAATGAC TGGTCTCAGAAACTGAACTCATTGATGTCTTTAGTTAACAAAACCACACACCTCATAGCC AAAGAGGAGATGATACATAATCTACAATAGGGGTCTTCATGCCCTTACTGCTTTTAGAAA AGAGTTAAAATTGGAAGTCATTTAAAAAAAAACAAAAAGACTTTTATGGTGTATATGTTG TTGTTTTTTTTTTCTTTGCTCAGCTCTTTTGTCTAAAATTTAAAAGATAGTGAATACGTT TGAGGCCCCTTTCAACCTTTCAATTCCTCAGTTTCATTGTTAACTTTGCATTTGCAATTG GTGCATTTCTATTGTCTGAGTACTCAAAAAATTGTCATAACTTGCCTACATATGTTTTTC TGTCATTTGAAACCTTTTTAGCTATTACTTGTTTTCATTCAGCTAACAACCATAATTATA ATAAAAGCAGCATATGCACATTTAAAAAAAAAAAAAACCTGTGTTTCTAAACATTTTGTG AGATAGTGATTTAAGTGTTTTTAAAATAAAATAAAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 1-115, gnl|bosTau2|chr19 (43560040-43560154) | |
| 1-115, gnl|canFam2|chr9 (16290047-16289931) | |
| 1-115, gnl|canFam2|chr9 (16290043-16289908) | |
| 1-115, gnl|danRer3|chrUn (16447680-16447803) | |
| 1-115, gnl|danRer3|chrUn (16447691-16447826) | |
| 1-115, gnl|echTel1|scaffold_12828 (404-269) | |
| 1-115, gnl|echTel1|scaffold_310474 (3343-3459) | |
| 1-115, gnl|fr1|chrUn (277476945-277477065) | |
| 1-115, gnl|fr1|chrUn (277476953-277477088) | |
| 1-115, gnl|galGal2|chr18 (6934187-6934071) | |
| 1-115, gnl|galGal2|chr18 (6934183-6934064) | |
| 1-115, gnl|hg17|chr17 (62773690-62773806) | |
| 1-115, gnl|Hg17|chr17 (62773807-62773693) | |
| 1-115, gnl|hg17|chr3 (73009150-73009285) | |
| 1-115, gnl|loxAfr1|scaffold_20129 (20696-20812) | |
| 1-115, gnl|loxAfr1|scaffold_20129 (20700-20835) | |
| 1-115, gnl|mm7|chr11 (107601198-107601082) | |
| 1-115, gnl|mm7|chr11 (107601191-107601059) | |
| 1-115, gnl|Mm7|chr11 (107601079-107601193) | |
| 1-115, gnl|monDom2|scaffold_18 (18196743-18196627) | |
| 1-115, gnl|monDom2|scaffold_18 (18196739-18196604) | |
| 1-115, gnl|panTro1|chr19 (66052041-66052157) | |
| 1-115, gnl|panTro1|chr2 (74979333-74979468) | |
| 1-115, gnl|rheMac2|chr16 (62689944-62690060) | |
| 1-115, gnl|rheMac2|chr16 (62689951-62690083) | |
| 1-115, gnl|rn3|chr10 (96908552-96908436) | |
| 1-115, gnl|rn3|chr5 (13880909-13880774) | |
| 1-115, gnl|tetNig1|chrUn_random (51300104-51300217) | |
| 1-115, gnl|tetNig1|chrUn_random (51300105-51300240) | |
| 1-115, gnl|xenTro1|scaffold_857 (3390-3506) | |
| 1-115, gnl|xenTro1|scaffold_857 (3394-3529) | |
| 223-402, gnl|bosTau2|chr19 (43561910-43562089) | |
| 223-402, gnl|canFam2|chr9 (16292506-16292333) | |
| 223-402, gnl|danRer3|chrUn (16447191-16447364) | |
| 223-402, gnl|dasNov1|scaffold_907 (4247-4420) | |
| 223-402, gnl|echTel1|scaffold_12828 (688-515) | |
| 223-402, gnl|fr1|chrUn (277476189-277476362) | |
| 223-402, gnl|galGal2|chr18 (6935397-6935223) | |
| 223-402, gnl|Hg17|chr17 (62771363-62771184) | |
| 223-402, gnl|hg17|chr3 (73008863-73009037) | |
| 223-402, gnl|loxAfr1|scaffold_20129 (18881-19055) | |
| 223-402, gnl|mm7|chr11 (107603829-107603672) | |
| 223-402, gnl|Mm7|chr11 (107603666-107603845) | |
| 223-402, gnl|monDom2|scaffold_18 (18199431-18199257) | |
| 223-402, gnl|oryCun1|scaffold_160214 (552-710) | |
| 223-402, gnl|panTro1|chr2 (74979046-74979220) | |
| 223-402, gnl|rheMac2|chr2 (63336757-63336583) | |
| 223-402, gnl|rn3|chr5 (13881195-13881022) | |
| 223-402, gnl|tetNig1|chrUn_random (51299190-51299363) | |
| 223-402, gnl|xenTro1|scaffold_857 (2329-2502) | |
| 472-1116, gnl|bosTau2|chr19 (43564865-43565526) | |
| 472-1116, gnl|Hg17|chr17 (62767640-62767002) | |
| 472-1116, gnl|Mm7|chr11 (107606557-107607119) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-115, gnl|bosTau2|chr19 (43560040-43560154) | |
| 1-115, gnl|canFam2|chr9 (16290047-16289931) | |
| 1-115, gnl|canFam2|chr9 (16290043-16289908) | |
| 1-115, gnl|danRer3|chrUn (16447680-16447803) | |
| 1-115, gnl|danRer3|chrUn (16447691-16447826) | |
| 1-115, gnl|echTel1|scaffold_12828 (404-269) | |
| 1-115, gnl|echTel1|scaffold_310474 (3343-3459) | |
| 1-115, gnl|fr1|chrUn (277476945-277477065) | |
| 1-115, gnl|fr1|chrUn (277476953-277477088) | |
| 1-115, gnl|galGal2|chr18 (6934187-6934071) | |
| 1-115, gnl|galGal2|chr18 (6934183-6934064) | |
| 1-115, gnl|hg17|chr17 (62773690-62773806) | |
| 1-115, gnl|Hg17|chr17 (62773807-62773693) | |
| 1-115, gnl|hg17|chr3 (73009150-73009285) | |
| 1-115, gnl|loxAfr1|scaffold_20129 (20696-20812) | |
| 1-115, gnl|loxAfr1|scaffold_20129 (20700-20835) | |
| 1-115, gnl|mm7|chr11 (107601198-107601082) | |
| 1-115, gnl|mm7|chr11 (107601191-107601059) | |
| 1-115, gnl|Mm7|chr11 (107601079-107601193) | |
| 1-115, gnl|monDom2|scaffold_18 (18196743-18196627) | |
| 1-115, gnl|monDom2|scaffold_18 (18196739-18196604) | |
| 1-115, gnl|panTro1|chr19 (66052041-66052157) | |
| 1-115, gnl|panTro1|chr2 (74979333-74979468) | |
| 1-115, gnl|rheMac2|chr16 (62689944-62690060) | |
| 1-115, gnl|rheMac2|chr16 (62689951-62690083) | |
| 1-115, gnl|rn3|chr10 (96908552-96908436) | |
| 1-115, gnl|rn3|chr5 (13880909-13880774) | |
| 1-115, gnl|tetNig1|chrUn_random (51300104-51300217) | |
| 1-115, gnl|tetNig1|chrUn_random (51300105-51300240) | |
| 1-115, gnl|xenTro1|scaffold_857 (3390-3506) | |
| 1-115, gnl|xenTro1|scaffold_857 (3394-3529) | |
| 223-402, gnl|bosTau2|chr19 (43561910-43562089) | |
| 223-402, gnl|canFam2|chr9 (16292506-16292333) | |
| 223-402, gnl|danRer3|chrUn (16447191-16447364) | |
| 223-402, gnl|dasNov1|scaffold_907 (4247-4420) | |
| 223-402, gnl|echTel1|scaffold_12828 (688-515) | |
| 223-402, gnl|fr1|chrUn (277476189-277476362) | |
| 223-402, gnl|galGal2|chr18 (6935397-6935223) | |
| 223-402, gnl|Hg17|chr17 (62771363-62771184) | |
| 223-402, gnl|hg17|chr3 (73008863-73009037) | |
| 223-402, gnl|loxAfr1|scaffold_20129 (18881-19055) | |
| 223-402, gnl|mm7|chr11 (107603829-107603672) | |
| 223-402, gnl|Mm7|chr11 (107603666-107603845) | |
| 223-402, gnl|monDom2|scaffold_18 (18199431-18199257) | |
| 223-402, gnl|oryCun1|scaffold_160214 (552-710) | |
| 223-402, gnl|panTro1|chr2 (74979046-74979220) | |
| 223-402, gnl|rheMac2|chr2 (63336757-63336583) | |
| 223-402, gnl|rn3|chr5 (13881195-13881022) | |
| 223-402, gnl|tetNig1|chrUn_random (51299190-51299363) | |
| 223-402, gnl|xenTro1|scaffold_857 (2329-2502) | |
| 472-1116, gnl|bosTau2|chr19 (43564865-43565526) | |
| 472-1116, gnl|Hg17|chr17 (62767640-62767002) | |
| 472-1116, gnl|Mm7|chr11 (107606557-107607119) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| pla (0.267344) | |
| nms (0.213858) | |
| cty (0.20816) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| sin (0.174948) | |
| rec (0.17307) | |
| fhi (0.169578) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| ebs (0.118301) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) | |
| nms (0.213858) | |
| cty (0.20816) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| sin (0.174948) | |
| rec (0.17307) | |
| fhi (0.169578) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| ebs (0.118301) |