Non-Coding RNA Search

Ss1.1-Pig4-TMW8057F01.3

Sequence:


               
               ATTAGAATGATAACATGTATATGGATAAAGATGCAGTATTCCTCATTCTGTACTTTATTT
ATTATACTTACCAAAGCTGCAATGGAATAAATCTGGTGAGGTGAGGCCTTCAGATGTATT
AGTACGCCTTTGTTATATTGTTATGACTGCTTAGAAGTGTAGCCATGATGTCGTTATAAA
GGTGTCTTAACATTTAGAGTAAGGATTGACAGAATTGAAGCAGTGTTAAGAATACCAGCA
TTCATGATGTGTTGAGTTGTAGTCTTTGTGTAAGGGACTGAATGTGAGATAACTATTATG
AATCATAATAGGCCCAGGAAGCCTTAATACTCATAGTCCATAATCCAGTCTCAGATTTTG
GTCCTTACTAACTAACGCCTGTAAATTTAGGAGGTAAATGTATTCTACAGCTTCATTGAT
CAGATCTCTTCCTTCCAGTTTTCCGAGGTAGTGCATCTCATTAAAAAATCAATTTGATTT
GCTTTTGTTTAGTAAAAGGGTTTGGTAAACCATGTCTTCCATATCACATTTCTACGTATC
CCCACACTGCCTTCCTCTTACCTGTACAGGCACCGCCAACACATGCACACCTGAATACAC
ACCTGTATATGCAGCAGCCAGTGGGCTAATAAATATCAATGAAGAACTTTTTTAAAAAAG
AATGAATTTGTAATAATCCATGCTGTCTAGAAATGTAAGTTATTTACCTTATTAAGGAAT
CAGCTTATGATGCTATATATGACTTTGCCTGCATTTTATAGTTAAGAAGTGTACATAAAA
ATTTTAAATGCTATATTTTCTCAGTTTCATTATAGAATAATGTCTGTTTAGCAACCCATG
TCCATTGGTACTTTAAATATGCTAAATACTGTGCAATTGCAATAGAAATTCAGATTTTCA
TAAGAAAATGAAATAGGATACTGCATCTTAAAAGAAAATAGAGTGAAGCTATTTTGCTGT
ATTCGTAACATATGTGATAGTGGAAAAGTATTTTCAAACTCACAAATTTTACAGAGGTTG
TAAATAGTTTGATGAAGTATGTTGGGAAAAAAGAGCTTCTAGTTTTCATCACAATAAAAA
AAGAAAAACTTGTTCAGATATGCCTTGTATATCTTACATACAATTAGCGATGTTGCCATG
GCAACTCTGTTCCACTTGGTCAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTAGAATGATAACATGTATATGGATAAAGATGCAGTATTCCTCATTCTGTACTTTATTT
ATTATACTTACCAAAGCTGCAATGGAATAAATCTGGTGAGGTGAGGCCTTCAGATGTATT
AGTACGCCTTTGTTATATTGTTATGACTGCTTAGAAGTGTAGCCATGATGTCGTTATAAA
GGTGTCTTAACATTTAGAGTAAGGATTGACAGAATTGAAGCAGTGTTAAGAATACCAGCA
TTCATGATGTGTTGAGTTGTAGTCTTTGTGTAAGGGACTGAATGTGAGATAACTATTATG
AATCATAATAGGCCCAGGAAGCCTTAATACTCATAGTCCATAATCCAGTCTCAGATTTTG
GTCCTTACTAACTAACGCCTGTAAATTTAGGAGGTAAATGTATTCTACAGCTTCATTGAT
CAGATCTCTTCCTTCCAGTTTTCCGAGGTAGTGCATCTCATTAAAAAATCAATTTGATTT
GCTTTTGTTTAGTAAAAGGGTTTGGTAAACCATGTCTTCCATATCACATTTCTACGTATC
CCCACACTGCCTTCCTCTTACCTGTACAGGCACCGCCAACACATGCACACCTGAATACAC
ACCTGTATATGCAGCAGCCAGTGGGCTAATAAATATCAATGAAGAACTTTTTTAAAAAAG
AATGAATTTGTAATAATCCATGCTGTCTAGAAATGTAAGTTATTTACCTTATTAAGGAAT
CAGCTTATGATGCTATATATGACTTTGCCTGCATTTTATAGTTAAGAAGTGTACATAAAA
ATTTTAAATGCTATATTTTCTCAGTTTCATTATAGAATAATGTCTGTTTAGCAACCCATG
TCCATTGGTACTTTAAATATGCTAAATACTGTGCAATTGCAATAGAAATTCAGATTTTCA
TAAGAAAATGAAATAGGATACTGCATCTTAAAAGAAAATAGAGTGAAGCTATTTTGCTGT
ATTCGTAACATATGTGATAGTGGAAAAGTATTTTCAAACTCACAAATTTTACAGAGGTTG
TAAATAGTTTGATGAAGTATGTTGGGAAAAAAGAGCTTCTAGTTTTCATCACAATAAAAA
AAGAAAAACTTGTTCAGATATGCCTTGTATATCTTACATACAATTAGCGATGTTGCCATG
GCAACTCTGTTCCACTTGGTCAGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               937-1054, + strand, RNAz p=0.668666

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               937-1054, + strand, RNAz p=0.668666

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1163, gnl|bosTau2|chr12 (24419658-24420827)
               

               
               1-1163, gnl|Hg17|chr13 (73163921-73162776)
               

               
               1-1163, gnl|Mm7|chr14 (94275292-94274164)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1163, gnl|bosTau2|chr12 (24419658-24420827)
               

               
               1-1163, gnl|Hg17|chr13 (73163921-73162776)
               

               
               1-1163, gnl|Mm7|chr14 (94275292-94274164)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               ret (0.128733)
               

               
               ese (0.126502)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               ret (0.128733)
               

               
               ese (0.126502)

	1-1163, gnl\|bosTau2\|chr12 (24419658-24420827)
	1-1163, gnl\|Hg17\|chr13 (73163921-73162776)
	1-1163, gnl\|Mm7\|chr14 (94275292-94274164)