Non-Coding RNA Search

Ss1.1-Pig4-TMW8057F09.3

Sequence:


               
               AAAATCGAAAGCCCCTTGACCTGGCCTATCAGGCTAGGGGATGATCTAATGATGGAGATT
TTCCTCTGTCCTTCCCTCCCTTTGCCTCTTCCAAGACCCACCCAACTCCTCCTCCCTCAG
AGAGAACCAAATAGCTTGAAGAAGCAGGAGAGTTCGTGGCTGTGGCCGTTTCTTGGTGAT
TTGGGGCTTCGAAACAGTAGGTAAGAGATGCTGTCAGGACATATCCCCCTCATACCAAAG
TCACTGGTCCTTTCCCAGCCTCTCTTGTGCTTTTTCCCTAATGATCATATTTTTGCCAAA
AATTGGGATATGTGGTCTGACAGACCAGAATATTTGACATTTAGACTGTCCTGGAAGCCT
AGACTCTGGTTGTACTGCCTTCCCCCTTGCCCCTGTGTTGCACATTTTTCTCAGCGCTGG
TCTTCAACTTTTGGCGCCCTTATTTCCCTGTCTCCCTGGTGGCTTGATGGAAAGAAAGCT
TGAAAAGGCGTGGAGCCCTCATACCTCATTATTTCTCCTGATGAAAGCACGCCTGTCACG
GCCTGCGGGTTGGGGAGGCACGGCGGGACCCTCATTGCCATGGTACTAAAATCAGTCCAG
AGCCTGGATGTTTTTTGCTTCTCTCTTCCCCTGCTATTCTTTGTATCTGCTCGGGCGAGG
TCATCTAGTTGTTCCCATTCGTCTCAGCCAGGGTCCTGCGCTGGGCTTAGTTCTTATTTC
ATTTTTAAAGCACTGCCTGCCAGAGAAGGGCCTTGGTCCTGAGGAGGAGTCCCTCACAGC
TGCTCCCTCCCTTACAGCCAGAGCTCACATTCCTCGGTGGGGTGGGGAAGGCAGGCTTGG
GGCGTGGCCCCGACGGGAGCCGGGGGTCCCTTGCTGGCCCTTCCCCGTGTGAAGAGAAGA
CACGGATGCTGCAGAACTTGGCCAGTGCAGCATTCAGCCTTTGAGGCTGTGAAAAAGAAG
GCAGCGGCCTCTGGGCTTCTCTTCTCCAGGGTTCTTCCCACCGGACAGCAGAGATGGCAC
CCCCCTCCCTCAACTTTGTGTTGTGTTTGTGGTTCTGTTCGCTCCTCTTCCATCTGTTGC
TATTTTTGTGGTCTCTCCCATGGCAGCATTTTGTAAGGTGGCTCCTGAGGGGCGGCGGTG
GTGGTGGGGTGTCAGCTCAATCCCTCTCTCCCCCTCACTCCACAACTTTTTGGAAGCAAG
TGGGGGTGGCAGAGATGTGGGGAAAGTTTTGTACGGTTGGATTAATAAAATGACTTTGGA
AAATCCAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAATCGAAAGCCCCTTGACCTGGCCTATCAGGCTAGGGGATGATCTAATGATGGAGATT
TTCCTCTGTCCTTCCCTCCCTTTGCCTCTTCCAAGACCCACCCAACTCCTCCTCCCTCAG
AGAGAACCAAATAGCTTGAAGAAGCAGGAGAGTTCGTGGCTGTGGCCGTTTCTTGGTGAT
TTGGGGCTTCGAAACAGTAGGTAAGAGATGCTGTCAGGACATATCCCCCTCATACCAAAG
TCACTGGTCCTTTCCCAGCCTCTCTTGTGCTTTTTCCCTAATGATCATATTTTTGCCAAA
AATTGGGATATGTGGTCTGACAGACCAGAATATTTGACATTTAGACTGTCCTGGAAGCCT
AGACTCTGGTTGTACTGCCTTCCCCCTTGCCCCTGTGTTGCACATTTTTCTCAGCGCTGG
TCTTCAACTTTTGGCGCCCTTATTTCCCTGTCTCCCTGGTGGCTTGATGGAAAGAAAGCT
TGAAAAGGCGTGGAGCCCTCATACCTCATTATTTCTCCTGATGAAAGCACGCCTGTCACG
GCCTGCGGGTTGGGGAGGCACGGCGGGACCCTCATTGCCATGGTACTAAAATCAGTCCAG
AGCCTGGATGTTTTTTGCTTCTCTCTTCCCCTGCTATTCTTTGTATCTGCTCGGGCGAGG
TCATCTAGTTGTTCCCATTCGTCTCAGCCAGGGTCCTGCGCTGGGCTTAGTTCTTATTTC
ATTTTTAAAGCACTGCCTGCCAGAGAAGGGCCTTGGTCCTGAGGAGGAGTCCCTCACAGC
TGCTCCCTCCCTTACAGCCAGAGCTCACATTCCTCGGTGGGGTGGGGAAGGCAGGCTTGG
GGCGTGGCCCCGACGGGAGCCGGGGGTCCCTTGCTGGCCCTTCCCCGTGTGAAGAGAAGA
CACGGATGCTGCAGAACTTGGCCAGTGCAGCATTCAGCCTTTGAGGCTGTGAAAAAGAAG
GCAGCGGCCTCTGGGCTTCTCTTCTCCAGGGTTCTTCCCACCGGACAGCAGAGATGGCAC
CCCCCTCCCTCAACTTTGTGTTGTGTTTGTGGTTCTGTTCGCTCCTCTTCCATCTGTTGC
TATTTTTGTGGTCTCTCCCATGGCAGCATTTTGTAAGGTGGCTCCTGAGGGGCGGCGGTG
GTGGTGGGGTGTCAGCTCAATCCCTCTCTCCCCCTCACTCCACAACTTTTTGGAAGCAAG
TGGGGGTGGCAGAGATGTGGGGAAAGTTTTGTACGGTTGGATTAATAAAATGACTTTGGA
AAATCCAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               52-168, - strand, RNAz p=0.868413
               

               
               209-326, + strand, RNAz p=0.614577

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               52-168, - strand, RNAz p=0.868413
               

               
               209-326, + strand, RNAz p=0.614577

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_138300, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_138300, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               52-1095, gnl|bosTau2|chr3 (9045915-9044897)
               

               
               52-1095, gnl|Hg17|chr1 (151743819-151742686)
               

               
               52-1095, gnl|Mm7|chr3 (89560658-89561656)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               52-1095, gnl|bosTau2|chr3 (9045915-9044897)
               

               
               52-1095, gnl|Hg17|chr1 (151743819-151742686)
               

               
               52-1095, gnl|Mm7|chr3 (89560658-89561656)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               fcc (0.197785)
               

               
               mcp (0.170648)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               mcp (0.170648)
               

               
               ecc (0.115035)

	52-168, - strand, RNAz p=0.868413
	209-326, + strand, RNAz p=0.614577

	52-1095, gnl\|bosTau2\|chr3 (9045915-9044897)
	52-1095, gnl\|Hg17\|chr1 (151743819-151742686)
	52-1095, gnl\|Mm7\|chr3 (89560658-89561656)