Non-Coding RNA Search

Ss1.1-Pig4-TMW8057F16.5

Sequence:


               
               TCAAAGCAAAGACTTTGTCGCCTGCTGCTTCTTATCTAATTTACAAGGATATTTAATTTT
GTAAGGTATTTGTATATTTATGCAGCTGTAATTAATTGCACATTGAACTGGAAAAGCAAG
GGTGACCTAGCGTGTGGCCCCTGTTGGTACTCGGCCTTCCCTCGTCCGGGCTCCACTCCG
GTTCTCCTGGACAGTATCAGGGCTTGTTCGTTTCTCGTTTGACTCGGTCCTCCATTTTTC
CTTTTGATTCCCTTTTTAAAATGTGATTGTTAACCTGCTCTTTAAAGAGACTAATTTTGC
TGCTGCTCTCAGAAGGTTTGCTGAATGTATTTTAACCAGGACTCTAACTTGATGCACCGC
CATGTCCCCCCAGCCAGTGATGATTCGCCCAGACCCTGACTGCGCAGCGGGAATGTATAG
ATTTGTGCTTCCTTACTAAGTGCAAGTGTCAGCTGAGAGATTATCTGCTGCTGTTGTTCA
AAAGGCCATTTATGAAACTTGTATTGGAGCCCCATAAAATCTTAGGAAAGCCTCTAATCA
TTTGAAGGAAGAAATTAGAGTTGATTCAAATTTCATGTTAAAAACTCACAGCCAGACTGG
CCTGTGTTCAGGTGGAAAGCTGGAGCTGAGGTTGGTCTCTTGCCAAACCCTAGCTGTCAT
GTGTTTTTTTCATGTCTTCGAGTTCGTTGTTTTCATGCAGCATATACCCTGGCATCATTC
ACCTGAGGAGTCCATCTGCCTTCTCACGAGTCGTCCTAGACCTTGTGGCTCTAAAGTATT
TGTCCGTTGAGATTTCGAGTCTCTCGTCACCACCCTCGTGCACTACAACAAAACCATGAA
GCATAAGTGGCCTTTTTGAACCAAGACTTTGCAAACTGATCTCTCCCCAGTGACGGAGTT
GAGCACATTTAGCAACGATGTACATTATTAATTTCAGGTTTTCATTTTCATGTTTTATTA
TGTAAATACTCTCTGATGTTTGGAGCTTGAGTATACAGTATGTAAATATAGTTCTCGTAT
TTGTACTAATTCTGGTTCTTTTGCTGTATAGCCTTAGATGTGCAATGCGGACATTATCTA
CCTGTGTGTGGTAACCTTGCATCGCGGAACTCTTAGTGAACGAGCTAAACATAATAAAGG
TACAGCCAGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAAAGCAAAGACTTTGTCGCCTGCTGCTTCTTATCTAATTTACAAGGATATTTAATTTT
GTAAGGTATTTGTATATTTATGCAGCTGTAATTAATTGCACATTGAACTGGAAAAGCAAG
GGTGACCTAGCGTGTGGCCCCTGTTGGTACTCGGCCTTCCCTCGTCCGGGCTCCACTCCG
GTTCTCCTGGACAGTATCAGGGCTTGTTCGTTTCTCGTTTGACTCGGTCCTCCATTTTTC
CTTTTGATTCCCTTTTTAAAATGTGATTGTTAACCTGCTCTTTAAAGAGACTAATTTTGC
TGCTGCTCTCAGAAGGTTTGCTGAATGTATTTTAACCAGGACTCTAACTTGATGCACCGC
CATGTCCCCCCAGCCAGTGATGATTCGCCCAGACCCTGACTGCGCAGCGGGAATGTATAG
ATTTGTGCTTCCTTACTAAGTGCAAGTGTCAGCTGAGAGATTATCTGCTGCTGTTGTTCA
AAAGGCCATTTATGAAACTTGTATTGGAGCCCCATAAAATCTTAGGAAAGCCTCTAATCA
TTTGAAGGAAGAAATTAGAGTTGATTCAAATTTCATGTTAAAAACTCACAGCCAGACTGG
CCTGTGTTCAGGTGGAAAGCTGGAGCTGAGGTTGGTCTCTTGCCAAACCCTAGCTGTCAT
GTGTTTTTTTCATGTCTTCGAGTTCGTTGTTTTCATGCAGCATATACCCTGGCATCATTC
ACCTGAGGAGTCCATCTGCCTTCTCACGAGTCGTCCTAGACCTTGTGGCTCTAAAGTATT
TGTCCGTTGAGATTTCGAGTCTCTCGTCACCACCCTCGTGCACTACAACAAAACCATGAA
GCATAAGTGGCCTTTTTGAACCAAGACTTTGCAAACTGATCTCTCCCCAGTGACGGAGTT
GAGCACATTTAGCAACGATGTACATTATTAATTTCAGGTTTTCATTTTCATGTTTTATTA
TGTAAATACTCTCTGATGTTTGGAGCTTGAGTATACAGTATGTAAATATAGTTCTCGTAT
TTGTACTAATTCTGGTTCTTTTGCTGTATAGCCTTAGATGTGCAATGCGGACATTATCTA
CCTGTGTGTGGTAACCTTGCATCGCGGAACTCTTAGTGAACGAGCTAAACATAATAAAGG
TACAGCCAGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1153, gnl|bosTau2|chr16 (31815072-31816228)
               

               
               1-1153, gnl|Hg17|chr1 (10374462-10375921)
               

               
               1-1153, gnl|Mm7|chr4 (148167076-148165866)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1153, gnl|bosTau2|chr16 (31815072-31816228)
               

               
               1-1153, gnl|Hg17|chr1 (10374462-10375921)
               

               
               1-1153, gnl|Mm7|chr4 (148167076-148165866)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               cbe (0.717703)
               

               
               fcc (0.39557)
               

               
               fbs (0.350693)
               

               
               ece (0.229305)
               

               
               fhi (0.169578)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.717703)
               

               
               fcc (0.39557)
               

               
               fbs (0.350693)
               

               
               ece (0.229305)
               

               
               fhi (0.169578)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

	1-1153, gnl\|bosTau2\|chr16 (31815072-31816228)
	1-1153, gnl\|Hg17\|chr1 (10374462-10375921)
	1-1153, gnl\|Mm7\|chr4 (148167076-148165866)

	cbe (0.717703)
	fcc (0.39557)
	fbs (0.350693)
	ece (0.229305)
	fhi (0.169578)
	ski (0.146735)
	hyp (0.142837)
	hlv (0.139256)
	ese (0.126502)
	ebs (0.118301)
	ecc (0.115035)
	spc (0.113366)
	nbm (0.0993246)