Non-Coding RNA Search

Ss1.1-Pig4-TMW8057G04.5

Sequence:


               
               CCTTGGACTCAGCCCCCAGTCTCTCCTCTTCACAAATCCAGTAGGACAGCGCCTTCCCTG
AACCTCACTTCTTTGGCGACAAGGAGAAACCCTCTGGCTTGGGAAAGAGACTCTAGACGC
CAAGCCCCGAGCTCCAGTTCTCCCCCGCTCCTGCTCTTCCGGGCGCGGCCTCCCAGCGGA
CGCCGTAAGACCCTGCAAATCTGCAAGGTGGGGGCGGGGCGAGCCGTGGCGCGTGGAACC
AACACGGCGCAAGGAATATCCGCTCCGGCGCCGGGACAAGCAGGTTTGAGGGGAAAAGAA
GGCTTCGATGGTCCGTGACTGCGTCCGTCCCCAATTGGAGCCGGCTTGAAACTTGTTTCT
CGCCAAGGATCACAGTCCGGAGGAAAAGGCGGGGGACGGGGAAAAAGATATAACATTACA
ATCGAGCAGAGAGTTTGAGTGCTTCACCCAGTGGCCGGAACCTGGCACGATGCCCGGCCC
CTCGCAGTGAAAGGGAGTTGGGGGGATGCTCCAATGCGGAGCACCGGCTTCGCTTGCCGG
GAATGAGAGAGGAATGCTTATTCCCCCCCAGGTGGCCTGGGAGTACTGCCGGGAGGAAAA
AATTTGCCTGGAACTGAAGCCTTACCCTTGACTAGGGCCGGCAACCAAGCCACGCCTAGG
GTTCAGCATTAAAAAAAGCCTGGAGGCACTAAGGGTTTGTTTTAAAAACTGCACGTTTCC
ACTTGGGCTGGTATTTAACTCATTTTAGCTTTACTATTACAGATTTATTCGTTTTGTCAT
TAGTCATTTCATTTTATAGTTTTAATTTGCGGCTATTGCCTGTGTTTTGAATTTTTTTAT
ATTTGCTTTTATTTCCCATAGTGACTTGCAAGGCAGAAAGTTTGTTTTTAATTTTCCTGG
TTGTTGCCTTTTAGTTTATCAAATAAAAATGCGGTTTATATTTGCCAAATTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTGGACTCAGCCCCCAGTCTCTCCTCTTCACAAATCCAGTAGGACAGCGCCTTCCCTG
AACCTCACTTCTTTGGCGACAAGGAGAAACCCTCTGGCTTGGGAAAGAGACTCTAGACGC
CAAGCCCCGAGCTCCAGTTCTCCCCCGCTCCTGCTCTTCCGGGCGCGGCCTCCCAGCGGA
CGCCGTAAGACCCTGCAAATCTGCAAGGTGGGGGCGGGGCGAGCCGTGGCGCGTGGAACC
AACACGGCGCAAGGAATATCCGCTCCGGCGCCGGGACAAGCAGGTTTGAGGGGAAAAGAA
GGCTTCGATGGTCCGTGACTGCGTCCGTCCCCAATTGGAGCCGGCTTGAAACTTGTTTCT
CGCCAAGGATCACAGTCCGGAGGAAAAGGCGGGGGACGGGGAAAAAGATATAACATTACA
ATCGAGCAGAGAGTTTGAGTGCTTCACCCAGTGGCCGGAACCTGGCACGATGCCCGGCCC
CTCGCAGTGAAAGGGAGTTGGGGGGATGCTCCAATGCGGAGCACCGGCTTCGCTTGCCGG
GAATGAGAGAGGAATGCTTATTCCCCCCCAGGTGGCCTGGGAGTACTGCCGGGAGGAAAA
AATTTGCCTGGAACTGAAGCCTTACCCTTGACTAGGGCCGGCAACCAAGCCACGCCTAGG
GTTCAGCATTAAAAAAAGCCTGGAGGCACTAAGGGTTTGTTTTAAAAACTGCACGTTTCC
ACTTGGGCTGGTATTTAACTCATTTTAGCTTTACTATTACAGATTTATTCGTTTTGTCAT
TAGTCATTTCATTTTATAGTTTTAATTTGCGGCTATTGCCTGTGTTTTGAATTTTTTTAT
ATTTGCTTTTATTTCCCATAGTGACTTGCAAGGCAGAAAGTTTGTTTTTAATTTTCCTGG
TTGTTGCCTTTTAGTTTATCAAATAAAAATGCGGTTTATATTTGCCAAATTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-194, - strand, RNAz p=0.613832

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-194, - strand, RNAz p=0.613832

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-957, gnl|bosTau2|chr13 (34550797-34551750)
               

               
               2-957, gnl|Hg17|chr20 (3102456-3103417)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-957, gnl|bosTau2|chr13 (34550797-34551750)
               

               
               2-957, gnl|Hg17|chr20 (3102456-3103417)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fce (0.271592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)

	2-957, gnl\|bosTau2\|chr13 (34550797-34551750)
	2-957, gnl\|Hg17\|chr20 (3102456-3103417)