Non-Coding RNA Search

Ss1.1-Pig4-TMW8057G08.5

Sequence:


               
               TTTTCCGGGTTTTTTTTCTGTTACAGATTGTTATGTTAAACTCCGTTTCTGACCTTCATG
GCTATATTGACAAAAGCCAACTGACAGAGGACTTAGGGGGAACTTTGGAATATCGCCACA
GTCAGTGGATAAATCATCGAACTGTGAGTATCAATTTATGTGCCTTTTTCAGTGTCCCTC
CGGCTTTTCTAGTTCCGTCATGGTCTGTCCCAAGAGAACTGATGTTGTTCCCTGTGTTGT
ACAGTAGGACCTCATTGCTTATCCATTCTAAATGTAGTAGTTTGCATCTACTAACCCCAA
ACTCCCAGTCCATCCCATTCCCTCCCCTCTCTGTCTAGGCAGCCATAAGTCTGTTCTTTA
AGTCTGTGAGTCTGTTTCTATTCTGTCAATAGGTTCATTTGTGCCCTATTTTAGGGAATC
AAGTTAATTTGTTAATGGGACCTACCGTAGGAAAGCTCTGGCTTTCCTCTATTTCTGGGA
TGACATTTGTAGGCCTCACATACCCTCTTATCTTAATTCTTACTATTACATTTGTAAGGT
ACTCATCTGTGCCCCGGATTCTTTCAAATTTACCATTTCTTTTGATCCTTGAAAAACTCC
TGCAAAAATAGAGCAACCATGGGTTATAATCCTGCCTTCTTTCCTTCTTTGCTGCCCTAA
TAATATGATCTTGGCCGATTCACTTGCCCTATTAGAGCTTCAGTTCCCTCTTCTATGAAA
TGGAGATAAAATGCCTTCTGCTCTGGATTACTGAGATGATACAAAAATGTGTAGCACAAA
GTACAGTGCAGGAAACAGCAGCTAGTTCTCCTGTCCTATTGTGAGAGCATGTTGGTGAAT
GTTAATCCCTCCTCGTTGTTATGATGGTCTGATCTTCTAGGCCATTGAAAATTTTGCTTT
AGCATTGAAGACCACTGCCCAAATGCTCCGGACTTTTGGGGACTGTCTGGCCACAACAGA
GCTGCCCAGAAGTGTGCCATCCACTGAAGACCTTCTCATGTCCCACACAAAACAACGGGA
CAAGATGCAGGTAAGTGGTCAGTGACCTTTCAGAGGCCAGCATCTGTGCTGGTAGATGGT
CAGCTTCCTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCCGGGTTTTTTTTCTGTTACAGATTGTTATGTTAAACTCCGTTTCTGACCTTCATG
GCTATATTGACAAAAGCCAACTGACAGAGGACTTAGGGGGAACTTTGGAATATCGCCACA
GTCAGTGGATAAATCATCGAACTGTGAGTATCAATTTATGTGCCTTTTTCAGTGTCCCTC
CGGCTTTTCTAGTTCCGTCATGGTCTGTCCCAAGAGAACTGATGTTGTTCCCTGTGTTGT
ACAGTAGGACCTCATTGCTTATCCATTCTAAATGTAGTAGTTTGCATCTACTAACCCCAA
ACTCCCAGTCCATCCCATTCCCTCCCCTCTCTGTCTAGGCAGCCATAAGTCTGTTCTTTA
AGTCTGTGAGTCTGTTTCTATTCTGTCAATAGGTTCATTTGTGCCCTATTTTAGGGAATC
AAGTTAATTTGTTAATGGGACCTACCGTAGGAAAGCTCTGGCTTTCCTCTATTTCTGGGA
TGACATTTGTAGGCCTCACATACCCTCTTATCTTAATTCTTACTATTACATTTGTAAGGT
ACTCATCTGTGCCCCGGATTCTTTCAAATTTACCATTTCTTTTGATCCTTGAAAAACTCC
TGCAAAAATAGAGCAACCATGGGTTATAATCCTGCCTTCTTTCCTTCTTTGCTGCCCTAA
TAATATGATCTTGGCCGATTCACTTGCCCTATTAGAGCTTCAGTTCCCTCTTCTATGAAA
TGGAGATAAAATGCCTTCTGCTCTGGATTACTGAGATGATACAAAAATGTGTAGCACAAA
GTACAGTGCAGGAAACAGCAGCTAGTTCTCCTGTCCTATTGTGAGAGCATGTTGGTGAAT
GTTAATCCCTCCTCGTTGTTATGATGGTCTGATCTTCTAGGCCATTGAAAATTTTGCTTT
AGCATTGAAGACCACTGCCCAAATGCTCCGGACTTTTGGGGACTGTCTGGCCACAACAGA
GCTGCCCAGAAGTGTGCCATCCACTGAAGACCTTCTCATGTCCCACACAAAACAACGGGA
CAAGATGCAGGTAAGTGGTCAGTGACCTTTCAGAGGCCAGCATCTGTGCTGGTAGATGGT
CAGCTTCCTGGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               89-192, + strand, RNAz p=0.727217

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               89-192, + strand, RNAz p=0.727217

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               11-192, gnl|bosTau2|chr1 (52203118-52202937)
               

               
               11-192, gnl|Hg17|chr3 (184523860-184523676)
               

               
               11-192, gnl|Mm7|chr16 (19355471-19355190)
               


               
               193-413, gnl|bosTau2|chr10 (39228223-39228003)
               


               
               592-1092, gnl|bosTau2|chr1 (52201950-52201440)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-192, gnl|bosTau2|chr1 (52203118-52202937)
               

               
               11-192, gnl|Hg17|chr3 (184523860-184523676)
               

               
               11-192, gnl|Mm7|chr16 (19355471-19355190)
               


               
               193-413, gnl|bosTau2|chr10 (39228223-39228003)
               


               
               592-1092, gnl|bosTau2|chr1 (52201950-52201440)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tra (0.123092)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.123092)

	11-192, gnl\|bosTau2\|chr1 (52203118-52202937)
	11-192, gnl\|Hg17\|chr3 (184523860-184523676)
	11-192, gnl\|Mm7\|chr16 (19355471-19355190)

	193-413, gnl\|bosTau2\|chr10 (39228223-39228003)

	592-1092, gnl\|bosTau2\|chr1 (52201950-52201440)