Ss1.1-Pig4-TMW8057G11.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTACCTCTTCCCTGCAAAGGTCGTCTCTCGCCTGGTGAAGTGGGTGGCAATTGCCCATG AGGATTACATGGAGCTGCATTTCACCAAAGACATTGTGGAGGCGGGACTGGCCGGGGACA CCAATCTCTACTACATGGCACTCGTGGAAAGGGGCACAGCTAAGCTCCAGGCGGCCGTGG TGCTGAACCCTGGCTACTCCTCCATCCCGCCCATTTTCCAGCTCTGTCTGAACTGGAAAG GGGAGAAAACCAACAGCAACGATGACAATATTCGGGCCATGGAGAGCGAGGTCAACGTTT GCTACAAAGAGCTGTGTGGCCCCCGGCCCAGCCACCAGCTCTTGACCAACCAGCTGCAGC GCCTGTGCGTGCTGTTGGACGTCTACCTGGAGACGGAGAGCCACGACGACAGTGTGGAGG GGCCCAAGGAATTTCCCCAGGAGAAGATGTGTCTGAGGCTTTTCAGGGGTCCCAGCAGGA TGAAGCCGTTTAAATATAACCATCCTCAAGGATTCTTCAGCCATCGCTGACCTCCCACTT AGCTATTGTCCGCCTCCAGACCCCAGTACTGCACTTCTTTCTGATCTGGCACACATGTGG CTCTTGATATTCTCCAAAGACAGGTTTTCTATTTGTAGCCTATTAAAGTGTCACCTGACC AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTACCTCTTCCCTGCAAAGGTCGTCTCTCGCCTGGTGAAGTGGGTGGCAATTGCCCATG AGGATTACATGGAGCTGCATTTCACCAAAGACATTGTGGAGGCGGGACTGGCCGGGGACA CCAATCTCTACTACATGGCACTCGTGGAAAGGGGCACAGCTAAGCTCCAGGCGGCCGTGG TGCTGAACCCTGGCTACTCCTCCATCCCGCCCATTTTCCAGCTCTGTCTGAACTGGAAAG GGGAGAAAACCAACAGCAACGATGACAATATTCGGGCCATGGAGAGCGAGGTCAACGTTT GCTACAAAGAGCTGTGTGGCCCCCGGCCCAGCCACCAGCTCTTGACCAACCAGCTGCAGC GCCTGTGCGTGCTGTTGGACGTCTACCTGGAGACGGAGAGCCACGACGACAGTGTGGAGG GGCCCAAGGAATTTCCCCAGGAGAAGATGTGTCTGAGGCTTTTCAGGGGTCCCAGCAGGA TGAAGCCGTTTAAATATAACCATCCTCAAGGATTCTTCAGCCATCGCTGACCTCCCACTT AGCTATTGTCCGCCTCCAGACCCCAGTACTGCACTTCTTTCTGATCTGGCACACATGTGG CTCTTGATATTCTCCAAAGACAGGTTTTCTATTTGTAGCCTATTAAAGTGTCACCTGACC AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 53-163, gnl|bosTau2|chr17 (39463828-39463719) | |
| 53-163, gnl|canFam2|chr26 (25787802-25787917) | |
| 53-163, gnl|danRer3|chrUn (28206373-28206263) | |
| 53-163, gnl|dasNov1|scaffold_496 (88163-88283) | |
| 53-163, gnl|echTel1|scaffold_324884 (3381-3261) | |
| 53-163, gnl|fr1|chrUn (1463280-1463393) | |
| 53-163, gnl|galGal2|chr15 (10985939-10985822) | |
| 53-163, gnl|hg17|chr22 (28237566-28237686) | |
| 53-163, gnl|Hg17|chr22 (28237680-28237568) | |
| 53-163, gnl|loxAfr1|scaffold_2086 (86739-86859) | |
| 53-163, gnl|mm7|chr11 (4874241-4874125) | |
| 53-163, gnl|Mm7|chr11 (4874130-4874237) | |
| 53-163, gnl|monDom2|scaffold_89 (3275038-3275163) | |
| 53-163, gnl|oryCun1|scaffold_201587 (69551-69670) | |
| 53-163, gnl|panTro1|chr23 (28329969-28330089) | |
| 53-163, gnl|rheMac2|chr10 (73345112-73345232) | |
| 53-163, gnl|rn3|chr14 (85603457-85603341) | |
| 53-163, gnl|tetNig1|chr12 (6030821-6030926) | |
| 53-163, gnl|xenTro1|scaffold_207 (469296-469411) | |
| 275-467, gnl|bosTau2|chr17 (39460608-39460416) | |
| 275-467, gnl|canFam2|chr26 (25782218-25782417) | |
| 275-467, gnl|danRer3|chrUn (28208587-28208388) | |
| 275-467, gnl|dasNov1|scaffold_496 (80293-80492) | |
| 275-467, gnl|echTel1|scaffold_316706 (10939-10753) | |
| 275-467, gnl|fr1|chrUn (1462804-1462999) | |
| 275-467, gnl|galGal2|chr15 (10986470-10986271) | |
| 275-467, gnl|hg17|chr22 (28231644-28231843) | |
| 275-467, gnl|Hg17|chr22 (28231840-28231648) | |
| 275-467, gnl|loxAfr1|scaffold_2086 (83513-83712) | |
| 275-467, gnl|mm7|chr11 (4878246-4878047) | |
| 275-467, gnl|Mm7|chr11 (4878048-4878240) | |
| 275-467, gnl|monDom2|scaffold_89 (3273475-3273674) | |
| 275-467, gnl|oryCun1|scaffold_201587 (64187-64388) | |
| 275-467, gnl|panTro1|chr23 (28324011-28324210) | |
| 275-467, gnl|rheMac2|chr10 (73341985-73342184) | |
| 275-467, gnl|rn3|chr14 (85607654-85607455) | |
| 275-467, gnl|tetNig1|chr12 (6030327-6030522) | |
| 275-467, gnl|xenTro1|scaffold_207 (466631-466830) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 53-163, gnl|bosTau2|chr17 (39463828-39463719) | |
| 53-163, gnl|canFam2|chr26 (25787802-25787917) | |
| 53-163, gnl|danRer3|chrUn (28206373-28206263) | |
| 53-163, gnl|dasNov1|scaffold_496 (88163-88283) | |
| 53-163, gnl|echTel1|scaffold_324884 (3381-3261) | |
| 53-163, gnl|fr1|chrUn (1463280-1463393) | |
| 53-163, gnl|galGal2|chr15 (10985939-10985822) | |
| 53-163, gnl|hg17|chr22 (28237566-28237686) | |
| 53-163, gnl|Hg17|chr22 (28237680-28237568) | |
| 53-163, gnl|loxAfr1|scaffold_2086 (86739-86859) | |
| 53-163, gnl|mm7|chr11 (4874241-4874125) | |
| 53-163, gnl|Mm7|chr11 (4874130-4874237) | |
| 53-163, gnl|monDom2|scaffold_89 (3275038-3275163) | |
| 53-163, gnl|oryCun1|scaffold_201587 (69551-69670) | |
| 53-163, gnl|panTro1|chr23 (28329969-28330089) | |
| 53-163, gnl|rheMac2|chr10 (73345112-73345232) | |
| 53-163, gnl|rn3|chr14 (85603457-85603341) | |
| 53-163, gnl|tetNig1|chr12 (6030821-6030926) | |
| 53-163, gnl|xenTro1|scaffold_207 (469296-469411) | |
| 275-467, gnl|bosTau2|chr17 (39460608-39460416) | |
| 275-467, gnl|canFam2|chr26 (25782218-25782417) | |
| 275-467, gnl|danRer3|chrUn (28208587-28208388) | |
| 275-467, gnl|dasNov1|scaffold_496 (80293-80492) | |
| 275-467, gnl|echTel1|scaffold_316706 (10939-10753) | |
| 275-467, gnl|fr1|chrUn (1462804-1462999) | |
| 275-467, gnl|galGal2|chr15 (10986470-10986271) | |
| 275-467, gnl|hg17|chr22 (28231644-28231843) | |
| 275-467, gnl|Hg17|chr22 (28231840-28231648) | |
| 275-467, gnl|loxAfr1|scaffold_2086 (83513-83712) | |
| 275-467, gnl|mm7|chr11 (4878246-4878047) | |
| 275-467, gnl|Mm7|chr11 (4878048-4878240) | |
| 275-467, gnl|monDom2|scaffold_89 (3273475-3273674) | |
| 275-467, gnl|oryCun1|scaffold_201587 (64187-64388) | |
| 275-467, gnl|panTro1|chr23 (28324011-28324210) | |
| 275-467, gnl|rheMac2|chr10 (73341985-73342184) | |
| 275-467, gnl|rn3|chr14 (85607654-85607455) | |
| 275-467, gnl|tetNig1|chr12 (6030327-6030522) | |
| 275-467, gnl|xenTro1|scaffold_207 (466631-466830) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| ill (0.175593) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nbm (0.0993246) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.175593) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nbm (0.0993246) |