Non-Coding RNA Search

Ss1.1-Pig4-TMW8057G15.3

Sequence:


               
               GATGGACTTGCAGACACCTTGAGGCTGGGTTTCTCTTTTTGGAGAAAAGGAACAGGGCAG
TGGAATTAATTTTTTTGTTGTTTTTGTTTTTAAGAAACAAAACAGAACTGCCTTTGCACT
AAATTAGTGACTTGGACTTTTGCACAGTGAAGACAGGCTGTGACACTCTGGATGTCTTGG
TGTATGTAAACACACATCGCAGACTCTCACGCAGGACTTTGTGAACTCTGCTGAAATCTT
GGGGTCAAGGAACATTTCATTGGGTTGTTTCGTCCCCACTCCTTCCCTTCCCTTCCCCTT
GCTCATTTGGATGTGTCACCTTTCTTAATTCTCCTGCTGCCACCATCTTTGATTCACCCA
GGATGTACAGTTTACAATCAAAAAAGAGCAAACGGAAGGATTTTCTTTCTTGGTGGAATA
TACAGAACTTGGGATGTGTGTATATATAAATATATAATATATATAAATATATATAATACT
AAAAAAAAAAATCAAATTCCCCGACATACATTTTTTTTAATCTGTGCCAAAAATGTGTTT
TCAGAGAAGATCTTATTTTCATACTCAGACTTTGTATTGTCACTCATTTGTATAAGTGCG
CTTCGTTACAGCACGGGCCCTGCCCCCGCAATTTGGAAGTGTCACACACACACACACACA
CACACAAGACTGTACAAAAAGACTGGCTTCCCTTCCTATGACCTTGACCTCTCCCCCAAC
TTCCTAACACTTATTAATTTATGAAACTTTTTCTCAGCGCAGTTTTGTTTTGTGTGTCCA
TTGGATTACAAACTTTATTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGGACTTGCAGACACCTTGAGGCTGGGTTTCTCTTTTTGGAGAAAAGGAACAGGGCAG
TGGAATTAATTTTTTTGTTGTTTTTGTTTTTAAGAAACAAAACAGAACTGCCTTTGCACT
AAATTAGTGACTTGGACTTTTGCACAGTGAAGACAGGCTGTGACACTCTGGATGTCTTGG
TGTATGTAAACACACATCGCAGACTCTCACGCAGGACTTTGTGAACTCTGCTGAAATCTT
GGGGTCAAGGAACATTTCATTGGGTTGTTTCGTCCCCACTCCTTCCCTTCCCTTCCCCTT
GCTCATTTGGATGTGTCACCTTTCTTAATTCTCCTGCTGCCACCATCTTTGATTCACCCA
GGATGTACAGTTTACAATCAAAAAAGAGCAAACGGAAGGATTTTCTTTCTTGGTGGAATA
TACAGAACTTGGGATGTGTGTATATATAAATATATAATATATATAAATATATATAATACT
AAAAAAAAAAATCAAATTCCCCGACATACATTTTTTTTAATCTGTGCCAAAAATGTGTTT
TCAGAGAAGATCTTATTTTCATACTCAGACTTTGTATTGTCACTCATTTGTATAAGTGCG
CTTCGTTACAGCACGGGCCCTGCCCCCGCAATTTGGAAGTGTCACACACACACACACACA
CACACAAGACTGTACAAAAAGACTGGCTTCCCTTCCTATGACCTTGACCTCTCCCCCAAC
TTCCTAACACTTATTAATTTATGAAACTTTTTCTCAGCGCAGTTTTGTTTTGTGTGTCCA
TTGGATTACAAACTTTATTAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               73-189, - strand, RNAz p=0.792497
               

               
               355-474, + strand, RNAz p=0.899283

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               73-189, - strand, RNAz p=0.792497
               

               
               355-474, + strand, RNAz p=0.899283

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_015001, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_015001, +

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-659, gnl|bosTau2|chr16 (36860375-36861011)
               

               
               1-659, gnl|Hg17|chr1 (16011459-16012117)
               

               
               1-659, gnl|Mm7|chr4 (140847125-140846469)
               


               
               674-804, gnl|bosTau2|chr16 (36861002-36861137)
               

               
               674-804, gnl|canFam2|chr2 (84580683-84580343)
               

               
               674-804, gnl|dasNov1|scaffold_5346 (14632-14305)
               

               
               674-804, gnl|echTel1|scaffold_302167 (5152-4836)
               

               
               674-804, gnl|galGal2|chr21 (4151286-4151610)
               

               
               674-804, gnl|hg17|chr1 (16011927-16012254)
               

               
               674-804, gnl|Hg17|chr1 (16012108-16012245)
               

               
               674-804, gnl|loxAfr1|scaffold_113 (19030-18713)
               

               
               674-804, gnl|mm7|chr4 (140846659-140846334)
               

               
               674-804, gnl|Mm7|chr4 (140846478-140846341)
               

               
               674-804, gnl|monDom2|scaffold_109 (3272239-3271895)
               

               
               674-804, gnl|oryCun1|scaffold_166176 (810-1130)
               

               
               674-804, gnl|panTro1|chr1 (16177842-16178168)
               

               
               674-804, gnl|rheMac2|chr1 (18742216-18742542)
               

               
               674-804, gnl|rn3|chr5 (160370248-160369930)
               

               
               674-804, gnl|xenTro1|scaffold_68 (73899-74255)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-659, gnl|bosTau2|chr16 (36860375-36861011)
               

               
               1-659, gnl|Hg17|chr1 (16011459-16012117)
               

               
               1-659, gnl|Mm7|chr4 (140847125-140846469)
               


               
               674-804, gnl|bosTau2|chr16 (36861002-36861137)
               

               
               674-804, gnl|canFam2|chr2 (84580683-84580343)
               

               
               674-804, gnl|dasNov1|scaffold_5346 (14632-14305)
               

               
               674-804, gnl|echTel1|scaffold_302167 (5152-4836)
               

               
               674-804, gnl|galGal2|chr21 (4151286-4151610)
               

               
               674-804, gnl|hg17|chr1 (16011927-16012254)
               

               
               674-804, gnl|Hg17|chr1 (16012108-16012245)
               

               
               674-804, gnl|loxAfr1|scaffold_113 (19030-18713)
               

               
               674-804, gnl|mm7|chr4 (140846659-140846334)
               

               
               674-804, gnl|Mm7|chr4 (140846478-140846341)
               

               
               674-804, gnl|monDom2|scaffold_109 (3272239-3271895)
               

               
               674-804, gnl|oryCun1|scaffold_166176 (810-1130)
               

               
               674-804, gnl|panTro1|chr1 (16177842-16178168)
               

               
               674-804, gnl|rheMac2|chr1 (18742216-18742542)
               

               
               674-804, gnl|rn3|chr5 (160370248-160369930)
               

               
               674-804, gnl|xenTro1|scaffold_68 (73899-74255)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cte (0.29274)
               

               
               hyp (0.285673)
               

               
               med (0.232504)
               

               
               tra (0.123092)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               hyp (0.285673)
               

               
               med (0.232504)
               

               
               tra (0.123092)

	73-189, - strand, RNAz p=0.792497
	355-474, + strand, RNAz p=0.899283

	1-659, gnl\|bosTau2\|chr16 (36860375-36861011)
	1-659, gnl\|Hg17\|chr1 (16011459-16012117)
	1-659, gnl\|Mm7\|chr4 (140847125-140846469)

	674-804, gnl\|bosTau2\|chr16 (36861002-36861137)
	674-804, gnl\|canFam2\|chr2 (84580683-84580343)
	674-804, gnl\|dasNov1\|scaffold_5346 (14632-14305)
	674-804, gnl\|echTel1\|scaffold_302167 (5152-4836)
	674-804, gnl\|galGal2\|chr21 (4151286-4151610)
	674-804, gnl\|hg17\|chr1 (16011927-16012254)
	674-804, gnl\|Hg17\|chr1 (16012108-16012245)
	674-804, gnl\|loxAfr1\|scaffold_113 (19030-18713)
	674-804, gnl\|mm7\|chr4 (140846659-140846334)
	674-804, gnl\|Mm7\|chr4 (140846478-140846341)
	674-804, gnl\|monDom2\|scaffold_109 (3272239-3271895)
	674-804, gnl\|oryCun1\|scaffold_166176 (810-1130)
	674-804, gnl\|panTro1\|chr1 (16177842-16178168)
	674-804, gnl\|rheMac2\|chr1 (18742216-18742542)
	674-804, gnl\|rn3\|chr5 (160370248-160369930)
	674-804, gnl\|xenTro1\|scaffold_68 (73899-74255)