Non-Coding RNA Search

Ss1.1-Pig4-TMW8057G18.5

Sequence:


               
               TTTTTTTTAGGGGTGGATTTTTTGGTGTGTTAATTTAATCATACAAATATTCATTTATAC
AGTAAGGAAAAACCTCCTCATCTCCATTTTCTCCCAGGCACCATGACGCCCCACCAAACA
CCACCCAGCCTGCTACACGCCCCACCAAACACCACCCAGCCTGCTACACCACCACTGCCC
AGGTAGAGGAGGCAGCTCCAGCATTCACCCAAGGAAACGAAAGGCAAGGGGTGGGGTGGG
AGTGTGGGTGAATCAGCTTGTACTTCTGGGCCCTGGCAACCCCACCACCCTCTCCTGCTG
GGGCTCACACTGAATTTGGGGAGCTGGTTATTTTTATGCCCACTTCCTACCCTGGCTGCC
CTCAGGCCACACCAGCTATCTTGGTGAGGCTCTCTCCAGGTTGGACATGCCTCTGATACA
GCCAGTCCTTGCTGGGGGGGAAGAGGCGGCTGTTTCTCATAGAAAAATGCCTCAAATTCA
ACTGTCCCCATGGCAAAAAGAAAAAAAGCATGCACGCGTGCACACACGTCCACACACACC
TCACTCCATGCACAAGATAGGTTCTTTCCAAGCCTGAGCCCCTCTGCCTCCCCTGCTGGG
CTCAGGTCCTTAAGGATGGTGCCTGCCTCACCTTGCGGGGGTCAGACCCTGGTGGTCCTT
CCTGCCTGGAGGCAGAGGGGGGGCTCCGGGAGCTCCACAGACCCTAAACCTGTAAGACAA
GGCAGCGTGAGTGGTACCAACAGCCTCCAGGTCCGAGGGAGCTATGCACTTCTCCTGCCC
CTGCCCTACGGCTTGCGATTGCTCTGGCCTCTGCAAGGAGCTTACCTGCCCAAGGACATG
CACAGAGACAGTTTGCTCTTGGGAGGGAAACCAACGTGCTTGGGACAGTCACTTTGGGGG
TGAGGTTGCCTAAAAGCAAGAGGAGGAGTGGGAGCCCCCTGGCAGGGCCAGACCCACTGA
CAGTGACCTAGGAGGCCACTGAACAAGGGCAGACAGCCCCTCCTGGGGAAGGCAGCAGGG
ACACCTAGTGTGAGGCAGGTCAGGAAACCAGATACTGTAAAGCCTCCCGTGCTCCTGCTG
GGGCAGCTGAAGATGTGATGCTTTGAGGGCTATCAAGTGAGGAGAACAGCTGGGCATGTG
GGGGCTCCAGGATGGCGGGTGTCCCAGGAGGTTGGCACCAACAGTGGCAGCAGTCTGGGC
CTTATAGGGCCCTCAAACAAAAAGCCATGGTGAGCCCTTGGCTTGGGCCTGTGGTGGCCT
GGGCACTGGCAGGGACCCCTGTCTGCTCTGCTGGGGATGGGGTGCTCTTCGTGTGCATAG
AAAGTAGGTGCTCTGGAGAGCACTGCCCTCTCAGCAGGCTGGCTGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTAGGGGTGGATTTTTTGGTGTGTTAATTTAATCATACAAATATTCATTTATAC
AGTAAGGAAAAACCTCCTCATCTCCATTTTCTCCCAGGCACCATGACGCCCCACCAAACA
CCACCCAGCCTGCTACACGCCCCACCAAACACCACCCAGCCTGCTACACCACCACTGCCC
AGGTAGAGGAGGCAGCTCCAGCATTCACCCAAGGAAACGAAAGGCAAGGGGTGGGGTGGG
AGTGTGGGTGAATCAGCTTGTACTTCTGGGCCCTGGCAACCCCACCACCCTCTCCTGCTG
GGGCTCACACTGAATTTGGGGAGCTGGTTATTTTTATGCCCACTTCCTACCCTGGCTGCC
CTCAGGCCACACCAGCTATCTTGGTGAGGCTCTCTCCAGGTTGGACATGCCTCTGATACA
GCCAGTCCTTGCTGGGGGGGAAGAGGCGGCTGTTTCTCATAGAAAAATGCCTCAAATTCA
ACTGTCCCCATGGCAAAAAGAAAAAAAGCATGCACGCGTGCACACACGTCCACACACACC
TCACTCCATGCACAAGATAGGTTCTTTCCAAGCCTGAGCCCCTCTGCCTCCCCTGCTGGG
CTCAGGTCCTTAAGGATGGTGCCTGCCTCACCTTGCGGGGGTCAGACCCTGGTGGTCCTT
CCTGCCTGGAGGCAGAGGGGGGGCTCCGGGAGCTCCACAGACCCTAAACCTGTAAGACAA
GGCAGCGTGAGTGGTACCAACAGCCTCCAGGTCCGAGGGAGCTATGCACTTCTCCTGCCC
CTGCCCTACGGCTTGCGATTGCTCTGGCCTCTGCAAGGAGCTTACCTGCCCAAGGACATG
CACAGAGACAGTTTGCTCTTGGGAGGGAAACCAACGTGCTTGGGACAGTCACTTTGGGGG
TGAGGTTGCCTAAAAGCAAGAGGAGGAGTGGGAGCCCCCTGGCAGGGCCAGACCCACTGA
CAGTGACCTAGGAGGCCACTGAACAAGGGCAGACAGCCCCTCCTGGGGAAGGCAGCAGGG
ACACCTAGTGTGAGGCAGGTCAGGAAACCAGATACTGTAAAGCCTCCCGTGCTCCTGCTG
GGGCAGCTGAAGATGTGATGCTTTGAGGGCTATCAAGTGAGGAGAACAGCTGGGCATGTG
GGGGCTCCAGGATGGCGGGTGTCCCAGGAGGTTGGCACCAACAGTGGCAGCAGTCTGGGC
CTTATAGGGCCCTCAAACAAAAAGCCATGGTGAGCCCTTGGCTTGGGCCTGTGGTGGCCT
GGGCACTGGCAGGGACCCCTGTCTGCTCTGCTGGGGATGGGGTGCTCTTCGTGTGCATAG
AAAGTAGGTGCTCTGGAGAGCACTGCCCTCTCAGCAGGCTGGCTGCAC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               261-448, - strand, RNAz p=0.999989
               

               
               529-662, - strand, RNAz p=0.980508

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               261-448, - strand, RNAz p=0.999989
               

               
               529-662, - strand, RNAz p=0.980508

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               3' of BC075810, -
               

               
               5' of BC075810, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC075810, -
               

               
               5' of BC075810, -

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               121-662, gnl|bosTau2|chr23 (6786312-6786875)
               

               
               121-662, gnl|Hg17|chr6 (34663120-34663698)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               121-662, gnl|bosTau2|chr23 (6786312-6786875)
               

               
               121-662, gnl|Hg17|chr6 (34663120-34663698)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               mas (0.42061)
               

               
               elu (0.385356)
               

               
               cov (0.264306)
               

               
               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               ski (0.146735)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.42061)
               

               
               elu (0.385356)
               

               
               cov (0.264306)
               

               
               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               ski (0.146735)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	261-448, - strand, RNAz p=0.999989
	529-662, - strand, RNAz p=0.980508

	121-662, gnl\|bosTau2\|chr23 (6786312-6786875)
	121-662, gnl\|Hg17\|chr6 (34663120-34663698)

	mas (0.42061)
	elu (0.385356)
	cov (0.264306)
	fcc (0.197785)
	ill (0.175593)
	mcp (0.170648)
	eye (0.170503)
	fhi (0.169578)
	cki (0.165235)
	csp (0.161186)
	ski (0.146735)
	cst (0.140036)
	che (0.136314)
	ssp (0.13552)
	ute (0.132784)
	eep (0.122564)
	eru (0.120048)
	nbm (0.0993246)
	jej (0.0989218)
	eje (0.0988338)