Non-Coding RNA Search

Ss1.1-Pig4-TMW8057G19.3

Sequence:


               
               TAGACATCAATGTTAAAGACAATGCTGGCTGGACGCCTTTGCATGAAGCTTGTAACTATG
GCAACACAGTGTGTGTCCAGGAAATTTTGCAACGTTGTCCAGAGGTAGATCTGCTCACTC
AAGTGGATGGGGTGACTCCTTTGCATGATGCACTGTCAAACGGACATGTAGAAATTGGCA
AGCTGCTACTCCAGCATGGGGGCCCAGTGCTTTTACAACAGAGGAACTCCAAGGGGGAAT
TACCCTTGGATTATGTATCATCCCAAATCAAGGAAGAGCTATTTGCTATTACAAAAATAG
AAGATACCGTGGAGAACTTTCACGCACAAGCAGAGAAACATTTTTACCACCAGCAACTTG
AATTTGGCTCATTTTTACTTAGTAGGATGTTACTGAATTTTTGTTCAATTTTTGATTTGT
CTTCAGAGTTCTTCTTAGCTTTCAAAGGACTGACTCATCTAAATGAGCTTCTTATGGCTT
GTCAGAATTATAAGGAAACCCCTAGTGCTCATACTGACTGGTTACTGGATCTTTATGCTA
GAAATACAAAGACATTGCAGAAGCTCCCAAATATTCTTAAGGAACTGCCTGAGAATTTAA
AAACATGTCCTGGAGTACACACTGAGGCCTTATTGGTGACATTGGAAATGATGTGTCGGT
CAGTCACAGAGTTTTCATGATGATGCCAAAAAATGTGGGTCAGCCTTCTGAACCTGCTCA
GCTTGCTTTGTCATTTATTGTGGACTTCCTAGTTTATTAACAAATAATAATTTTATCTAT
TTATTGACAGAATTTGCATCCTTGCTAATTGAAAAGCACTTAACTTATCCAAAACTAGTA
TAGGCTTCTTTATCCAGTGCATAGAATTGGACTCAATAGTAAAAAATAGTTTTGTTTGGT
ATACGCTTTTATTGATCTTTTTGTTTGTTTTAAAAGTGATATTATTTATTTATATTGTAC
ATGTAAAAACTTTTAAATATTTTTCCAAATCGAAATGTAATGTCCTCTATTCTAGGTGTT
CTGGGTCTTACAATCATGGCAAGAATACTAATGCAAATGTGCACTTATAAACATGTAGCT
TCCTGTTTCATTCTCTGTAGGCTGTTGGAATAAAGTATGCATTTTAGTTTTATGTGTTTC
TAAAATAAACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGACATCAATGTTAAAGACAATGCTGGCTGGACGCCTTTGCATGAAGCTTGTAACTATG
GCAACACAGTGTGTGTCCAGGAAATTTTGCAACGTTGTCCAGAGGTAGATCTGCTCACTC
AAGTGGATGGGGTGACTCCTTTGCATGATGCACTGTCAAACGGACATGTAGAAATTGGCA
AGCTGCTACTCCAGCATGGGGGCCCAGTGCTTTTACAACAGAGGAACTCCAAGGGGGAAT
TACCCTTGGATTATGTATCATCCCAAATCAAGGAAGAGCTATTTGCTATTACAAAAATAG
AAGATACCGTGGAGAACTTTCACGCACAAGCAGAGAAACATTTTTACCACCAGCAACTTG
AATTTGGCTCATTTTTACTTAGTAGGATGTTACTGAATTTTTGTTCAATTTTTGATTTGT
CTTCAGAGTTCTTCTTAGCTTTCAAAGGACTGACTCATCTAAATGAGCTTCTTATGGCTT
GTCAGAATTATAAGGAAACCCCTAGTGCTCATACTGACTGGTTACTGGATCTTTATGCTA
GAAATACAAAGACATTGCAGAAGCTCCCAAATATTCTTAAGGAACTGCCTGAGAATTTAA
AAACATGTCCTGGAGTACACACTGAGGCCTTATTGGTGACATTGGAAATGATGTGTCGGT
CAGTCACAGAGTTTTCATGATGATGCCAAAAAATGTGGGTCAGCCTTCTGAACCTGCTCA
GCTTGCTTTGTCATTTATTGTGGACTTCCTAGTTTATTAACAAATAATAATTTTATCTAT
TTATTGACAGAATTTGCATCCTTGCTAATTGAAAAGCACTTAACTTATCCAAAACTAGTA
TAGGCTTCTTTATCCAGTGCATAGAATTGGACTCAATAGTAAAAAATAGTTTTGTTTGGT
ATACGCTTTTATTGATCTTTTTGTTTGTTTTAAAAGTGATATTATTTATTTATATTGTAC
ATGTAAAAACTTTTAAATATTTTTCCAAATCGAAATGTAATGTCCTCTATTCTAGGTGTT
CTGGGTCTTACAATCATGGCAAGAATACTAATGCAAATGTGCACTTATAAACATGTAGCT
TCCTGTTTCATTCTCTGTAGGCTGTTGGAATAAAGTATGCATTTTAGTTTTATGTGTTTC
TAAAATAAACAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61846378|ref|XP_598485.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61846378|ref|XP_598485.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               201-1152, gnl|bosTau2|chr7 (58530908-58531872)
               

               
               201-1152, gnl|Hg17|chr5 (94056291-94057311)
               

               
               201-1152, gnl|Mm7|chr13 (74057695-74056770)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               201-1152, gnl|bosTau2|chr7 (58530908-58531872)
               

               
               201-1152, gnl|Hg17|chr5 (94056291-94057311)
               

               
               201-1152, gnl|Mm7|chr13 (74057695-74056770)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               ret (0.3862)
               

               
               sin (0.349895)
               

               
               tbr (0.308356)
               

               
               pgl (0.236967)
               

               
               mgm (0.180343)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.3862)
               

               
               sin (0.349895)
               

               
               tbr (0.308356)
               

               
               pgl (0.236967)
               

               
               mgm (0.180343)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)

	201-1152, gnl\|bosTau2\|chr7 (58530908-58531872)
	201-1152, gnl\|Hg17\|chr5 (94056291-94057311)
	201-1152, gnl\|Mm7\|chr13 (74057695-74056770)

	ret (0.3862)
	sin (0.349895)
	tbr (0.308356)
	pgl (0.236967)
	mgm (0.180343)
	cki (0.165235)
	fco (0.157208)
	isp (0.150376)
	kid (0.129735)
	bla (0.124347)
	ebs (0.118301)