Ss1.1-Pig4-TMW8057G22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGAAGTGCCTTGCTGCCGATGTGTTATCCAGTGACTGCGGTTTCTGTCGTTCTCCCTTC TTTCCCTGCCTGGGTATTTGCGTCGCACCATGGCGCCTAAGGGCAAAGTGGGCACGAGAG GGAAGAAGCAGATATTTGAGGAGAACAAAGAGACCCTGAAGTTCTATCTGCGGATCATAC TGGGGGCCAACGCCATTTACTGTCTTGTGACCCTGGTCATCTTCTACTCATCTGCCTCGT TTTGGGCCTGGATGGCTCTGGGCTTTAGTCTGGCAGTATATGGGGCCAGCTACCATTCTA TGAGCTCGATGGCAAGGGCAGCCTTCTCTGAGGATGGGGCCCTGATGGATGGTGGAATGG ACCTCAACATGGAACAGGGCATGGCAGAGCACCTTAAGGATGTGATCCTACTGACAGCCA TCGTGCAGGTGCTCAGCTGCTTTTCTCTCTACATCTGGTCCTTCTGGCTTCTGGCCCCAG GCAGAGCCCTTTACCTCCTGTGGGTCAATGTACTAGGCCCTTGGTTCACAGCAGAGAGTG GCACCCCAGCACCAGAGCACAACGAGAAAAGGCAGCGCCGACAGGAGCGGCGGCAAATGA AGCGGTTATAGCCACTGACATTGTGGCTACGAGTTTCTGGGCCCTGGGTGGCTGTCAGGC TGTGTAGCCCCCGTGCGAGGAGCAGCGAGGGCCTAGTCCAGGGGCCAAAAGCAGTCTAAG GCATAAAATTGTTGAATAAATGGCTTATGATGTGGCTAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGAAGTGCCTTGCTGCCGATGTGTTATCCAGTGACTGCGGTTTCTGTCGTTCTCCCTTC TTTCCCTGCCTGGGTATTTGCGTCGCACCATGGCGCCTAAGGGCAAAGTGGGCACGAGAG GGAAGAAGCAGATATTTGAGGAGAACAAAGAGACCCTGAAGTTCTATCTGCGGATCATAC TGGGGGCCAACGCCATTTACTGTCTTGTGACCCTGGTCATCTTCTACTCATCTGCCTCGT TTTGGGCCTGGATGGCTCTGGGCTTTAGTCTGGCAGTATATGGGGCCAGCTACCATTCTA TGAGCTCGATGGCAAGGGCAGCCTTCTCTGAGGATGGGGCCCTGATGGATGGTGGAATGG ACCTCAACATGGAACAGGGCATGGCAGAGCACCTTAAGGATGTGATCCTACTGACAGCCA TCGTGCAGGTGCTCAGCTGCTTTTCTCTCTACATCTGGTCCTTCTGGCTTCTGGCCCCAG GCAGAGCCCTTTACCTCCTGTGGGTCAATGTACTAGGCCCTTGGTTCACAGCAGAGAGTG GCACCCCAGCACCAGAGCACAACGAGAAAAGGCAGCGCCGACAGGAGCGGCGGCAAATGA AGCGGTTATAGCCACTGACATTGTGGCTACGAGTTTCTGGGCCCTGGGTGGCTGTCAGGC TGTGTAGCCCCCGTGCGAGGAGCAGCGAGGGCCTAGTCCAGGGGCCAAAAGCAGTCTAAG GCATAAAATTGTTGAATAAATGGCTTATGATGTGGCTAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 626-724, + strand, RNAz p=0.990202 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 626-724, + strand, RNAz p=0.990202 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC003080, + |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-102, gnl|bosTau2|chr18 (28752674-28752573) | |
| 1-102, gnl|canFam2|chr5 (85155509-85155427) | |
| 1-102, gnl|canFam2|chr5 (85155691-85155426) | |
| 1-102, gnl|dasNov1|scaffold_49840 (4120-4201) | |
| 1-102, gnl|dasNov1|scaffold_49840 (3936-4202) | |
| 1-102, gnl|echTel1|scaffold_320119 (5402-5481) | |
| 1-102, gnl|echTel1|scaffold_320119 (5236-5482) | |
| 1-102, gnl|hg17|chr1 (151156792-151156889) | |
| 1-102, gnl|hg17|chr16 (65818344-65818602) | |
| 1-102, gnl|Hg17|chr16 (65818533-65818634) | |
| 1-102, gnl|loxAfr1|scaffold_53484 (7268-7350) | |
| 1-102, gnl|loxAfr1|scaffold_53484 (7095-7351) | |
| 1-102, gnl|mm7|chr8 (103925016-103925086) | |
| 1-102, gnl|mm7|chr8 (103924825-103925087) | |
| 1-102, gnl|Mm7|chr8 (103925018-103925119) | |
| 1-102, gnl|monDom2|scaffold_23 (19674112-19673804) | |
| 1-102, gnl|oryCun1|scaffold_177848 (31060-31157) | |
| 1-102, gnl|panTro1|chr18 (60078005-60078263) | |
| 1-102, gnl|rheMac2|chr1 (132916936-132917031) | |
| 1-102, gnl|rheMac2|chr20 (65527517-65527776) | |
| 1-102, gnl|rn3|chr19 (35146278-35146360) | |
| 1-102, gnl|rn3|chr19 (35146103-35146361) | |
| 251-389, gnl|bosTau2|chr18 (28751411-28751273) | |
| 251-389, gnl|canFam2|chr5 (85154320-85154158) | |
| 251-389, gnl|danRer3|chr7 (43161158-43161303) | |
| 251-389, gnl|dasNov1|scaffold_49840 (5434-5596) | |
| 251-389, gnl|fr1|chrUn (153095699-153095860) | |
| 251-389, gnl|galGal2|chr11 (995126-995286) | |
| 251-389, gnl|hg17|chr16 (65819886-65820048) | |
| 251-389, gnl|Hg17|chr16 (65819898-65820036) | |
| 251-389, gnl|mm7|chr8 (103926948-103927110) | |
| 251-389, gnl|Mm7|chr8 (103926960-103927098) | |
| 251-389, gnl|monDom2|scaffold_23 (19670085-19669923) | |
| 251-389, gnl|oryCun1|scaffold_188148 (13806-13931) | |
| 251-389, gnl|panTro1|chr18 (60079547-60079709) | |
| 251-389, gnl|rheMac2|chr20 (65529058-65529220) | |
| 251-389, gnl|rn3|chr19 (35148170-35148332) | |
| 251-389, gnl|tetNig1|chrUn_random (161469066-161469228) | |
| 468-759, gnl|bosTau2|chr18 (28750800-28750506) | |
| 468-759, gnl|Hg17|chr16 (65820373-65820687) | |
| 468-759, gnl|Mm7|chr8 (103927404-103927696) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-102, gnl|bosTau2|chr18 (28752674-28752573) | |
| 1-102, gnl|canFam2|chr5 (85155509-85155427) | |
| 1-102, gnl|canFam2|chr5 (85155691-85155426) | |
| 1-102, gnl|dasNov1|scaffold_49840 (4120-4201) | |
| 1-102, gnl|dasNov1|scaffold_49840 (3936-4202) | |
| 1-102, gnl|echTel1|scaffold_320119 (5402-5481) | |
| 1-102, gnl|echTel1|scaffold_320119 (5236-5482) | |
| 1-102, gnl|hg17|chr1 (151156792-151156889) | |
| 1-102, gnl|hg17|chr16 (65818344-65818602) | |
| 1-102, gnl|Hg17|chr16 (65818533-65818634) | |
| 1-102, gnl|loxAfr1|scaffold_53484 (7268-7350) | |
| 1-102, gnl|loxAfr1|scaffold_53484 (7095-7351) | |
| 1-102, gnl|mm7|chr8 (103925016-103925086) | |
| 1-102, gnl|mm7|chr8 (103924825-103925087) | |
| 1-102, gnl|Mm7|chr8 (103925018-103925119) | |
| 1-102, gnl|monDom2|scaffold_23 (19674112-19673804) | |
| 1-102, gnl|oryCun1|scaffold_177848 (31060-31157) | |
| 1-102, gnl|panTro1|chr18 (60078005-60078263) | |
| 1-102, gnl|rheMac2|chr1 (132916936-132917031) | |
| 1-102, gnl|rheMac2|chr20 (65527517-65527776) | |
| 1-102, gnl|rn3|chr19 (35146278-35146360) | |
| 1-102, gnl|rn3|chr19 (35146103-35146361) | |
| 251-389, gnl|bosTau2|chr18 (28751411-28751273) | |
| 251-389, gnl|canFam2|chr5 (85154320-85154158) | |
| 251-389, gnl|danRer3|chr7 (43161158-43161303) | |
| 251-389, gnl|dasNov1|scaffold_49840 (5434-5596) | |
| 251-389, gnl|fr1|chrUn (153095699-153095860) | |
| 251-389, gnl|galGal2|chr11 (995126-995286) | |
| 251-389, gnl|hg17|chr16 (65819886-65820048) | |
| 251-389, gnl|Hg17|chr16 (65819898-65820036) | |
| 251-389, gnl|mm7|chr8 (103926948-103927110) | |
| 251-389, gnl|Mm7|chr8 (103926960-103927098) | |
| 251-389, gnl|monDom2|scaffold_23 (19670085-19669923) | |
| 251-389, gnl|oryCun1|scaffold_188148 (13806-13931) | |
| 251-389, gnl|panTro1|chr18 (60079547-60079709) | |
| 251-389, gnl|rheMac2|chr20 (65529058-65529220) | |
| 251-389, gnl|rn3|chr19 (35148170-35148332) | |
| 251-389, gnl|tetNig1|chrUn_random (161469066-161469228) | |
| 468-759, gnl|bosTau2|chr18 (28750800-28750506) | |
| 468-759, gnl|Hg17|chr16 (65820373-65820687) | |
| 468-759, gnl|Mm7|chr8 (103927404-103927696) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| amn (0.417711) | |
| ute (0.398353) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| nca (0.273748) | |
| col (0.195008) | |
| nlu (0.191681) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| cli (0.152812) | |
| cag (0.151194) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| cly (0.120642) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| ute (0.398353) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| nca (0.273748) | |
| col (0.195008) | |
| nlu (0.191681) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| cli (0.152812) | |
| cag (0.151194) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| cly (0.120642) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| jej (0.0989218) |