Non-Coding RNA Search

Ss1.1-Pig4-TMW8057I09.3

Sequence:


               
               AAGAATTTATACTTGAGGAGCAAAGTGTGACTGCCAATTATCAGGCTTTCAGGAATCAAA
TCCCCTACCATCCCCAGAGCTGAGAGAGGAAACCCTCCACCCATCCCAACCCAAAAAACC
TGGCCTCACTCCTTCTCCATCCACTACCACTCCACTGACCAAAACCCACTCCCAGACCTC
CTCGTTGACCACCACAGAAGACCTTGCCAGCAGCTGCTCTTCTAATGCTGTTGTAGCTAA
TGGCAAGGACGTCGAGATACTTCTGCCGACCAGCAGCTAGTCCCTAGGAGGGAGTCTCCA
CATTTGACATTCCATCAGATTTTGTCCAAAAGCTCAGTGTCAAACCATTGAGTCAGATCG
TGTTATTTATTTTGATAGTAGCTGAAACCATCTGTTTAATACATTTAGTGTATTTCACTT
TTTTGTATTTTTTTAAGTAGAAACTGAGTAATTAGGATTTTTATGACTCACATCTTTGTA
CTAAAGCTAGAAGGGCACCTCAAAGACGTCTAAGCTTCACAGTCACCATCATGTTATGAT
GGAGAAAGCTAAATGAGTACGAGTACCAGGTGGTGATTTGCTGTCTATTTGGGGACTAGA
ATCCCTCAACACTCACTTTGAATTATGCAGAAGTCGTTCATGCAGATTTTTATTCCAGAT
GAACATGTTTAAAAAGTGCCTGAAATTAGACTGCCATATGAATGTGATTCTGCAGCAAAA
ACACAAAATGCATCATTTAACTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAATTTATACTTGAGGAGCAAAGTGTGACTGCCAATTATCAGGCTTTCAGGAATCAAA
TCCCCTACCATCCCCAGAGCTGAGAGAGGAAACCCTCCACCCATCCCAACCCAAAAAACC
TGGCCTCACTCCTTCTCCATCCACTACCACTCCACTGACCAAAACCCACTCCCAGACCTC
CTCGTTGACCACCACAGAAGACCTTGCCAGCAGCTGCTCTTCTAATGCTGTTGTAGCTAA
TGGCAAGGACGTCGAGATACTTCTGCCGACCAGCAGCTAGTCCCTAGGAGGGAGTCTCCA
CATTTGACATTCCATCAGATTTTGTCCAAAAGCTCAGTGTCAAACCATTGAGTCAGATCG
TGTTATTTATTTTGATAGTAGCTGAAACCATCTGTTTAATACATTTAGTGTATTTCACTT
TTTTGTATTTTTTTAAGTAGAAACTGAGTAATTAGGATTTTTATGACTCACATCTTTGTA
CTAAAGCTAGAAGGGCACCTCAAAGACGTCTAAGCTTCACAGTCACCATCATGTTATGAT
GGAGAAAGCTAAATGAGTACGAGTACCAGGTGGTGATTTGCTGTCTATTTGGGGACTAGA
ATCCCTCAACACTCACTTTGAATTATGCAGAAGTCGTTCATGCAGATTTTTATTCCAGAT
GAACATGTTTAAAAAGTGCCTGAAATTAGACTGCCATATGAATGTGATTCTGCAGCAAAA
ACACAAAATGCATCATTTAACTGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               129-248, - strand, RNAz p=0.565912

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               129-248, - strand, RNAz p=0.565912

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               50-744, gnl|bosTau2|chr3 (27652413-27651725)
               

               
               50-744, gnl|Hg17|chr1 (112711847-112712530)
               

               
               50-744, gnl|Mm7|chr3 (104801997-104801380)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-744, gnl|bosTau2|chr3 (27652413-27651725)
               

               
               50-744, gnl|Hg17|chr1 (112711847-112712530)
               

               
               50-744, gnl|Mm7|chr3 (104801997-104801380)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               tes (0.207814)
               

               
               cut (0.169924)
               

               
               ski (0.146735)
               

               
               pla (0.133672)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               cut (0.169924)
               

               
               ski (0.146735)
               

               
               pla (0.133672)

	50-744, gnl\|bosTau2\|chr3 (27652413-27651725)
	50-744, gnl\|Hg17\|chr1 (112711847-112712530)
	50-744, gnl\|Mm7\|chr3 (104801997-104801380)