Non-Coding RNA Search

Ss1.1-Pig4-TMW8057J03.3

Sequence:


               
               CTTCTCCTCTCTTTAGAGGGAAAACGTGTATTTAACCTGCAGGGTTGTGATTCTGAGAGG
ACTATCCCCCTCCCAGGGCAGGGCAGGGGGCTTGGGCTCGGGCTGGTGGCACACTGTGCT
GAGGTGTGTAGCTTCCTGTCTCTCTTAGAAGCCCAGACAGGTTACAGGTAGAATATCGTT
TCCTGCAGGTGCCACTTTGGGGTAGCAAAATGTTCTGAGGTATTAGGATTTTGGTGTTTT
TGTTCTTGTTTTTTGTTGTTGCTTTTTCCTTTTGGGTCTTATTTTTTCTTCTTTTAAGGA
AAAGCAGAAAGGCCGTTATGAGTCCTGGAGGTGGGCTCTCCATGGATGTAGCATATGGAT
GATTTTTATACTGCATTTTTATGGATTATTTTATAATGTGTGATTCTGTCTGATGAGGAG
GCAGGGGGGGCTCAGGTGAACCCCCCTTCGATGCTCTTGCTCCCGGGTGAGCCCCTATCC
TGGCCTACCGTGGAGGCTGCAGAGACCGGCAGGGCACCCTTACCTTTCTGAGGTTGGGGA
GGGATGTCCAGAGTCTGTCTGTCTGTCTGTTTCTCTCTCTCTCTTTCTCTGGGTCTCAGA
TGTTCATCTACCACCTCTTAAGGGTGTTGCCACAAAGGAGGGGGAGGGTAGAAGAAAGTT
GATTCCTGAAGGAAAAAAGAAAATGAAAAGTCATTGTAATGAGCTGTTTTTATATTTTTA
AAAGTTACTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCTCCTCTCTTTAGAGGGAAAACGTGTATTTAACCTGCAGGGTTGTGATTCTGAGAGG
ACTATCCCCCTCCCAGGGCAGGGCAGGGGGCTTGGGCTCGGGCTGGTGGCACACTGTGCT
GAGGTGTGTAGCTTCCTGTCTCTCTTAGAAGCCCAGACAGGTTACAGGTAGAATATCGTT
TCCTGCAGGTGCCACTTTGGGGTAGCAAAATGTTCTGAGGTATTAGGATTTTGGTGTTTT
TGTTCTTGTTTTTTGTTGTTGCTTTTTCCTTTTGGGTCTTATTTTTTCTTCTTTTAAGGA
AAAGCAGAAAGGCCGTTATGAGTCCTGGAGGTGGGCTCTCCATGGATGTAGCATATGGAT
GATTTTTATACTGCATTTTTATGGATTATTTTATAATGTGTGATTCTGTCTGATGAGGAG
GCAGGGGGGGCTCAGGTGAACCCCCCTTCGATGCTCTTGCTCCCGGGTGAGCCCCTATCC
TGGCCTACCGTGGAGGCTGCAGAGACCGGCAGGGCACCCTTACCTTTCTGAGGTTGGGGA
GGGATGTCCAGAGTCTGTCTGTCTGTCTGTTTCTCTCTCTCTCTTTCTCTGGGTCTCAGA
TGTTCATCTACCACCTCTTAAGGGTGTTGCCACAAAGGAGGGGGAGGGTAGAAGAAAGTT
GATTCCTGAAGGAAAAAAGAAAATGAAAAGTCATTGTAATGAGCTGTTTTTATATTTTTA
AAAGTTACTATT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               7-103, - strand, RNAz p=0.993577
               

               
               260-451, - strand, RNAz p=0.657541
               

               
               491-598, - strand, RNAz p=0.696563

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               7-103, - strand, RNAz p=0.993577
               

               
               260-451, - strand, RNAz p=0.657541
               

               
               491-598, - strand, RNAz p=0.696563

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               7-732, gnl|bosTau2|chr9 (21800610-21801348)
               

               
               7-732, gnl|Hg17|chr15 (68128318-68127605)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-732, gnl|bosTau2|chr9 (21800610-21801348)
               

               
               7-732, gnl|Hg17|chr15 (68128318-68127605)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               elu (0.385356)
               

               
               cga (0.279096)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               pty (0.142714)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

Expressed library(ies): 12 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               cga (0.279096)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               pty (0.142714)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

	7-103, - strand, RNAz p=0.993577
	260-451, - strand, RNAz p=0.657541
	491-598, - strand, RNAz p=0.696563

	7-732, gnl\|bosTau2\|chr9 (21800610-21801348)
	7-732, gnl\|Hg17\|chr15 (68128318-68127605)

	elu (0.385356)
	cga (0.279096)
	cbe (0.239234)
	hea (0.204499)
	fli (0.202881)
	eye (0.170503)
	fhi (0.169578)
	cki (0.165235)
	mga (0.160205)
	pty (0.142714)
	eru (0.120048)
	jej (0.0989218)