Non-Coding RNA Search

Ss1.1-Pig4-TMW8057K09.3

Sequence:


               
               TATTTTTTAACATTAAAGTTGATAACAAAGGCCAAAAAAAGTTTAAAGTATACCTAAATT
TGGACTGTTTTCCTTCCTCCACAAACTTTTTTTTGTAATTATTATTTTTGTCATGAAAGC
ATCCTATCCAAAGTTGGAACTTCCAATGTCATGAACCTTTTAAGGAATGCACTTCTTTTT
GAAGTGAATACTAATTACTGCATTTGATAGCAATGTAAGTGCCTATAACCATGTTCTGTA
TTCTTTATTCTCAGTAACTTTTAAAAGGGAAGTTATTTATATTTTGTGTATAATATGCTT
TACTTGCAAATTACCTGCTCCTTTACAACCATATTTTATATATGTACATACATCCATACC
ATAGAAACCAGCTCATGTGTACCTCATATCCCATCCTTAAGGGAAAAAAAATTAAAAGAT
CATCAGAAAAAAAATGTCATAAAGTAGAACTACCTAAAAATTTTCAGAAATAATTCAAAG
TAGTATATCAATGCCAGGACTTTGTTTAACTTCAGGTCTAGGCATACCTTCATGAAGATA
CTATCATCTCAATATTCCTTTATAATGGGATCCTCCAATTAGAAATTTCTGTTTCAGAGT
TAATACAAATTTATAAACTGTTTTAGACATTTAAGTCACTTGAGATTTTTGGTTTTATGA
TTTCTGTTCCTTACGTTGTAAAGACAAGAGTTAGGCAAAAAAAGTTCAGTATCTAGTCAA
TACGTATTAACTATACCATATACCTGTTATTCAATAAAAGTGCTACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTTTTTAACATTAAAGTTGATAACAAAGGCCAAAAAAAGTTTAAAGTATACCTAAATT
TGGACTGTTTTCCTTCCTCCACAAACTTTTTTTTGTAATTATTATTTTTGTCATGAAAGC
ATCCTATCCAAAGTTGGAACTTCCAATGTCATGAACCTTTTAAGGAATGCACTTCTTTTT
GAAGTGAATACTAATTACTGCATTTGATAGCAATGTAAGTGCCTATAACCATGTTCTGTA
TTCTTTATTCTCAGTAACTTTTAAAAGGGAAGTTATTTATATTTTGTGTATAATATGCTT
TACTTGCAAATTACCTGCTCCTTTACAACCATATTTTATATATGTACATACATCCATACC
ATAGAAACCAGCTCATGTGTACCTCATATCCCATCCTTAAGGGAAAAAAAATTAAAAGAT
CATCAGAAAAAAAATGTCATAAAGTAGAACTACCTAAAAATTTTCAGAAATAATTCAAAG
TAGTATATCAATGCCAGGACTTTGTTTAACTTCAGGTCTAGGCATACCTTCATGAAGATA
CTATCATCTCAATATTCCTTTATAATGGGATCCTCCAATTAGAAATTTCTGTTTCAGAGT
TAATACAAATTTATAAACTGTTTTAGACATTTAAGTCACTTGAGATTTTTGGTTTTATGA
TTTCTGTTCCTTACGTTGTAAAGACAAGAGTTAGGCAAAAAAAGTTCAGTATCTAGTCAA
TACGTATTAACTATACCATATACCTGTTATTCAATAAAAGTGCTACAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-757, gnl|bosTau2|chr28 (31953369-31954122)
               

               
               1-757, gnl|Hg17|chr10 (88674169-88674905)
               

               
               1-757, gnl|Mm7|chr14 (31847186-31846562)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-757, gnl|bosTau2|chr28 (31953369-31954122)
               

               
               1-757, gnl|Hg17|chr10 (88674169-88674905)
               

               
               1-757, gnl|Mm7|chr14 (31847186-31846562)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               amn (0.417711)
               

               
               ton (0.1755)
               

               
               liv (0.146284)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               ton (0.1755)
               

               
               liv (0.146284)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	1-757, gnl\|bosTau2\|chr28 (31953369-31954122)
	1-757, gnl\|Hg17\|chr10 (88674169-88674905)
	1-757, gnl\|Mm7\|chr14 (31847186-31846562)

	amn (0.417711)
	ton (0.1755)
	liv (0.146284)
	ret (0.128733)
	eru (0.120048)
	jej (0.0989218)
	ldo (0.0970026)