Non-Coding RNA Search

Ss1.1-Pig4-TMW8057K20.3

Sequence:


               
               CGGCTGTAGGGAGAGCGTGTCTCCGCCGAGCACTTGGATTTGGCACCTTCGTTTCCAACA
TGGAAGAAACTTACATCGATTCCCTGGACCCTGAAAAGCTCATACAATGCCCCTATGATA
AAAATCACCAGATCAGGGCCTGCAGGTTTCCGTATCATCTTATCAAGTGCAGAAAGAATC
ATCCTGATGTCGCAAACAAACTGGCTACTTGTCCCTTCAATGCTCGCCATCAGGTTCCTC
GGGCTGAAATCAGTCATCATATTTCAAGCTGTGATGATAAAAGCTGTATTGAGCAAGATG
TAGTCAACCAAACCAGGAACCTTGGACAAGAGACCCTGGCTGAGAGCACATGGCAGTGCC
CTCCTTGCGATGAAGACTTGGATAAAGATTTGTGGGAACAAACCAGCACCACATTTGTCT
GGGGTACCGCCAACTACTGTGGCAACAACAGCCCTGCAAGCAACATAGTTATGGAACATA
AGAGTAACCTGGCTTCAGGCATGCGTGTTCCCAAGTCTCTGCCGTATGTTCTGCCATGGA
AAAACAATGGAAATGCACAGTAACTGAATATCTATCTCATCAAATGCCACACCCTAGAAG
ACTCTTGCTTCTTCCTGCTACAGTGGGTTCTTCATTTTTTTTCCTCCTAATCTAATTATA
GAAAGATAAATTGTCTGTGACTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCTGTAGGGAGAGCGTGTCTCCGCCGAGCACTTGGATTTGGCACCTTCGTTTCCAACA
TGGAAGAAACTTACATCGATTCCCTGGACCCTGAAAAGCTCATACAATGCCCCTATGATA
AAAATCACCAGATCAGGGCCTGCAGGTTTCCGTATCATCTTATCAAGTGCAGAAAGAATC
ATCCTGATGTCGCAAACAAACTGGCTACTTGTCCCTTCAATGCTCGCCATCAGGTTCCTC
GGGCTGAAATCAGTCATCATATTTCAAGCTGTGATGATAAAAGCTGTATTGAGCAAGATG
TAGTCAACCAAACCAGGAACCTTGGACAAGAGACCCTGGCTGAGAGCACATGGCAGTGCC
CTCCTTGCGATGAAGACTTGGATAAAGATTTGTGGGAACAAACCAGCACCACATTTGTCT
GGGGTACCGCCAACTACTGTGGCAACAACAGCCCTGCAAGCAACATAGTTATGGAACATA
AGAGTAACCTGGCTTCAGGCATGCGTGTTCCCAAGTCTCTGCCGTATGTTCTGCCATGGA
AAAACAATGGAAATGCACAGTAACTGAATATCTATCTCATCAAATGCCACACCCTAGAAG
ACTCTTGCTTCTTCCTGCTACAGTGGGTTCTTCATTTTTTTTCCTCCTAATCTAATTATA
GAAAGATAAATTGTCTGTGACTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61880683|ref|XP_583372.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61880683|ref|XP_583372.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               70-176, + strand, RNAz p=0.505376
               

               
               187-436, - strand, RNAz p=0.964884

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               70-176, + strand, RNAz p=0.505376
               

               
               187-436, - strand, RNAz p=0.964884

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               70-176, gnl|bosTau2|chr5 (16342287-16342394)
               

               
               70-176, gnl|canFam2|chr27 (3867419-3867298)
               

               
               70-176, gnl|danRer3|chr23 (45506651-45506527)
               

               
               70-176, gnl|dasNov1|scaffold_14255 (83198-83077)
               

               
               70-176, gnl|echTel1|scaffold_316571 (51820-51940)
               

               
               70-176, gnl|hg17|chr12 (53145104-53145217)
               

               
               70-176, gnl|Hg17|chr12 (53145225-53145118)
               

               
               70-176, gnl|loxAfr1|scaffold_27346 (32029-32150)
               

               
               70-176, gnl|mm7|chr15 (103414227-103414348)
               

               
               70-176, gnl|Mm7|chr15 (103414356-103414249)
               

               
               70-176, gnl|monDom2|scaffold_355 (30528-30649)
               

               
               70-176, gnl|panTro1|chr10 (54411878-54411991)
               

               
               70-176, gnl|rheMac2|chr11 (51581091-51581204)
               

               
               70-176, gnl|rn3|chr7 (142408133-142408254)
               

               
               70-176, gnl|tetNig1|chr9 (8848719-8848625)
               

               
               70-176, gnl|xenTro1|scaffold_136 (1436675-1436562)
               


               
               187-684, gnl|bosTau2|chr3 (2818649-2819132)
               


               
               213-672, gnl|bosTau2|chr2 (81371174-81371629)
               


               
               411-606, gnl|bosTau2|chr12 (23220295-23220491)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               70-176, gnl|bosTau2|chr5 (16342287-16342394)
               

               
               70-176, gnl|canFam2|chr27 (3867419-3867298)
               

               
               70-176, gnl|danRer3|chr23 (45506651-45506527)
               

               
               70-176, gnl|dasNov1|scaffold_14255 (83198-83077)
               

               
               70-176, gnl|echTel1|scaffold_316571 (51820-51940)
               

               
               70-176, gnl|hg17|chr12 (53145104-53145217)
               

               
               70-176, gnl|Hg17|chr12 (53145225-53145118)
               

               
               70-176, gnl|loxAfr1|scaffold_27346 (32029-32150)
               

               
               70-176, gnl|mm7|chr15 (103414227-103414348)
               

               
               70-176, gnl|Mm7|chr15 (103414356-103414249)
               

               
               70-176, gnl|monDom2|scaffold_355 (30528-30649)
               

               
               70-176, gnl|panTro1|chr10 (54411878-54411991)
               

               
               70-176, gnl|rheMac2|chr11 (51581091-51581204)
               

               
               70-176, gnl|rn3|chr7 (142408133-142408254)
               

               
               70-176, gnl|tetNig1|chr9 (8848719-8848625)
               

               
               70-176, gnl|xenTro1|scaffold_136 (1436675-1436562)
               


               
               187-684, gnl|bosTau2|chr3 (2818649-2819132)
               


               
               213-672, gnl|bosTau2|chr2 (81371174-81371629)
               


               
               411-606, gnl|bosTau2|chr12 (23220295-23220491)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tes (0.831255)
               

               
               cte (0.29274)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.831255)
               

               
               cte (0.29274)

	70-176, + strand, RNAz p=0.505376
	187-436, - strand, RNAz p=0.964884

	70-176, gnl\|bosTau2\|chr5 (16342287-16342394)
	70-176, gnl\|canFam2\|chr27 (3867419-3867298)
	70-176, gnl\|danRer3\|chr23 (45506651-45506527)
	70-176, gnl\|dasNov1\|scaffold_14255 (83198-83077)
	70-176, gnl\|echTel1\|scaffold_316571 (51820-51940)
	70-176, gnl\|hg17\|chr12 (53145104-53145217)
	70-176, gnl\|Hg17\|chr12 (53145225-53145118)
	70-176, gnl\|loxAfr1\|scaffold_27346 (32029-32150)
	70-176, gnl\|mm7\|chr15 (103414227-103414348)
	70-176, gnl\|Mm7\|chr15 (103414356-103414249)
	70-176, gnl\|monDom2\|scaffold_355 (30528-30649)
	70-176, gnl\|panTro1\|chr10 (54411878-54411991)
	70-176, gnl\|rheMac2\|chr11 (51581091-51581204)
	70-176, gnl\|rn3\|chr7 (142408133-142408254)
	70-176, gnl\|tetNig1\|chr9 (8848719-8848625)
	70-176, gnl\|xenTro1\|scaffold_136 (1436675-1436562)

	187-684, gnl\|bosTau2\|chr3 (2818649-2819132)

	213-672, gnl\|bosTau2\|chr2 (81371174-81371629)

	411-606, gnl\|bosTau2\|chr12 (23220295-23220491)