Non-Coding RNA Search

Ss1.1-Pig4-TMW8057L11.3

Sequence:


               
               CCGGCCGCAGGGCCCGCGGCTCGCCCTTCGTTCGGAGCAGCACCATCGTCCGTTCGCAGA
CTTTCTCGCCTGGAGCCCGAAGCCAGTACGTTTGCAGACTTTATCGTAGTGACAGCGACA
GCTCAACGCTGCCCCGGAAGTCCCCCTTTGTCCGAAACACTTTGGAAAGACGAACCCTTC
GCTATAAGCAGCCCTGCAGGTCCCCCCTGGCGGCGCTGGCAGCGCGCACGTCTCTTGACC
TGGAGCTGGACCTCCAGGCGTCGCGGACGCGGCAGCGGCAGCTGAACGAGGAGCTGGGTG
CCCTGCGCGAGCTGCGCCAGCGCCTGGAGGATGCCCAGCTCCGTGGCCACGCGGACCTCC
CGGCTTGGGTGCTGCGCGATGAGCGCTTCTGGAACCTGCTGCGGGAGGCGGAGAGGCAGA
CGAGACAGACCAAACTTGACTTCCATCAAGAACAGGCAGCTGAGAAGATGCTGAAGAAGG
CCTCCAAAGGGGTGTGCCAGCTGCGCGGGCAGAACCTCAAAGAGCCCATCCAGGTGCAGA
CGTTCAGGGAGAAGATAGCATTTTTTACAAGACCAAGGATTAACGTACCTCCTCTGCCCG
CCGATGATGTTTGATGTAGTACTTTGTACACATGAAGTATTTATCCACCTGTTTTATTTT
CATGAAGTTCTTAGACTAGCTCAATTTGTCTTTAAAATATTTGTGCAAAGCTATTAATAT
ACACATTTGGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGCCGCAGGGCCCGCGGCTCGCCCTTCGTTCGGAGCAGCACCATCGTCCGTTCGCAGA
CTTTCTCGCCTGGAGCCCGAAGCCAGTACGTTTGCAGACTTTATCGTAGTGACAGCGACA
GCTCAACGCTGCCCCGGAAGTCCCCCTTTGTCCGAAACACTTTGGAAAGACGAACCCTTC
GCTATAAGCAGCCCTGCAGGTCCCCCCTGGCGGCGCTGGCAGCGCGCACGTCTCTTGACC
TGGAGCTGGACCTCCAGGCGTCGCGGACGCGGCAGCGGCAGCTGAACGAGGAGCTGGGTG
CCCTGCGCGAGCTGCGCCAGCGCCTGGAGGATGCCCAGCTCCGTGGCCACGCGGACCTCC
CGGCTTGGGTGCTGCGCGATGAGCGCTTCTGGAACCTGCTGCGGGAGGCGGAGAGGCAGA
CGAGACAGACCAAACTTGACTTCCATCAAGAACAGGCAGCTGAGAAGATGCTGAAGAAGG
CCTCCAAAGGGGTGTGCCAGCTGCGCGGGCAGAACCTCAAAGAGCCCATCCAGGTGCAGA
CGTTCAGGGAGAAGATAGCATTTTTTACAAGACCAAGGATTAACGTACCTCCTCTGCCCG
CCGATGATGTTTGATGTAGTACTTTGTACACATGAAGTATTTATCCACCTGTTTTATTTT
CATGAAGTTCTTAGACTAGCTCAATTTGTCTTTAAAATATTTGTGCAAAGCTATTAATAT
ACACATTTGGTA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|13097624|gb|AAH03527.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|13097624|gb|AAH03527.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               227-346, - strand, RNAz p=0.81284

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               227-346, - strand, RNAz p=0.81284

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               188-424, gnl|bosTau2|chrX (41299050-41298814)
               

               
               188-424, gnl|Hg17|chrX (9916481-9916717)
               

               
               188-424, gnl|Mm7|chr11 (35695662-35695463)
               


               
               545-732, gnl|bosTau2|chrX (41297341-41297154)
               

               
               545-732, gnl|Hg17|chrX (9919208-9919398)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               188-424, gnl|bosTau2|chrX (41299050-41298814)
               

               
               188-424, gnl|Hg17|chrX (9916481-9916717)
               

               
               188-424, gnl|Mm7|chr11 (35695662-35695463)
               


               
               545-732, gnl|bosTau2|chrX (41297341-41297154)
               

               
               545-732, gnl|Hg17|chrX (9919208-9919398)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               mgp (0.230681)
               

               
               mgm (0.180343)
               

               
               ese (0.126502)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               mgm (0.180343)
               

               
               ese (0.126502)

	188-424, gnl\|bosTau2\|chrX (41299050-41298814)
	188-424, gnl\|Hg17\|chrX (9916481-9916717)
	188-424, gnl\|Mm7\|chr11 (35695662-35695463)

	545-732, gnl\|bosTau2\|chrX (41297341-41297154)
	545-732, gnl\|Hg17\|chrX (9919208-9919398)