Non-Coding RNA Search

Ss1.1-Pig4-TMW8057L18.5

Sequence:


               
               AGCTGTTCCGTAATCTCACACCAAGATGCTTCGTGACGACGAACTGTGCTCTGCAGTTCT
CGTCGCGCGGCATCCGGCCCGGCCTCACCACCGTCCTGGCTCGGAACCTGGACAAGAACA
CCGTGGGCTACCTGCAGTGGCGCTGGGGCATCCAGTCAGCCATGAACACCAGCATCGTAC
GGGACACCAAAACCAGCCACTTCACCGTGGCGCTGCAACTCGGAATCCCTCACTCCTTCG
CACTGATCAGTTATCAGCACAAGTTCCAGGATGACGACCAGACCCGCGTCAAAGGCTCCC
TCAAGGCAGGCTTCTTCGGGACGGTGGTGGAGTACGGAGCGGAGAGGAAGATCTCCAGGC
ACAGTGTCTTAGGGGCAGTGGTCAGCGTTGGAGTCCCCCAGGGCGTCTCTCTCAAAGTCA
AGTTAAACAGGGCCAGTCAGACCTACTTCTTCCCGATTCACCTGACGGACCAGCTGCTCC
CCAGCGCCGTGTTCTACGCCACCGTGGGGCCGCTCGTGCTCTACTTCGCAATGCACCGCC
TGGTCATCAAACCCTACCTCAGGGCCCAGAAGGAGAAGGAGCTGGAAAAGCAGAGGGAAA
GCACAGCCACCGACATTCTGCAGAAGAAACAGGAGGCAGAAGCTGCGGTCCGACTGATGC
AGGAATCGGTCCGAAGAATAATCGAGGCCGAAGAGTCCAGAATGGGGCTCATCATTGTCA
ACGCCTGGTATGGCAAGTTCGTCAGCGACAGGAGCAAGAGGCACGAGAGGGTCAAGGCCA
TCGACGTGACCGTGCCCCTGCAGTGCCTGGTCAGGGACTCCAAGCTCATCCTCACCGAGG
CCTCCAAGGCGGGGCTGCCTGGGTTCTATGACCCGTGTGTCGGGGAAGAGAAGAACCTGA
AAGTGCTCTACCAGTTCCGAGGCGTGCTGCATCAGGTGATGGCGCTGGACAGCGAGGCGC
TCAGGATACCAAAGCAGTCTCACAGGATTGATACTGATGGATAAAGGGCTTGAGAAACCG
GATTAAAAGGAGGCTGCAAAAAATCATTTCCTGGGAATCTACAAATTTGGAAGCAGGGAA
AATACCCAGACCTGAGGCGTGTTTATTTCGTGTCTCCGTTGGAGGGTGGTGCCGGATGGG
TCACGTGAAGGGGCACGGTCACGGGCACCGCCTCCCCGGGGGGCCAAGCTGGGGCCCGAG
CCGCCGCTCTTCCCAAGGATCGAGTCCCCGCAGGCAGGGGCCTCCCCAGGCCCCTGAGCT
CAGGCGCCGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTGTTCCGTAATCTCACACCAAGATGCTTCGTGACGACGAACTGTGCTCTGCAGTTCT
CGTCGCGCGGCATCCGGCCCGGCCTCACCACCGTCCTGGCTCGGAACCTGGACAAGAACA
CCGTGGGCTACCTGCAGTGGCGCTGGGGCATCCAGTCAGCCATGAACACCAGCATCGTAC
GGGACACCAAAACCAGCCACTTCACCGTGGCGCTGCAACTCGGAATCCCTCACTCCTTCG
CACTGATCAGTTATCAGCACAAGTTCCAGGATGACGACCAGACCCGCGTCAAAGGCTCCC
TCAAGGCAGGCTTCTTCGGGACGGTGGTGGAGTACGGAGCGGAGAGGAAGATCTCCAGGC
ACAGTGTCTTAGGGGCAGTGGTCAGCGTTGGAGTCCCCCAGGGCGTCTCTCTCAAAGTCA
AGTTAAACAGGGCCAGTCAGACCTACTTCTTCCCGATTCACCTGACGGACCAGCTGCTCC
CCAGCGCCGTGTTCTACGCCACCGTGGGGCCGCTCGTGCTCTACTTCGCAATGCACCGCC
TGGTCATCAAACCCTACCTCAGGGCCCAGAAGGAGAAGGAGCTGGAAAAGCAGAGGGAAA
GCACAGCCACCGACATTCTGCAGAAGAAACAGGAGGCAGAAGCTGCGGTCCGACTGATGC
AGGAATCGGTCCGAAGAATAATCGAGGCCGAAGAGTCCAGAATGGGGCTCATCATTGTCA
ACGCCTGGTATGGCAAGTTCGTCAGCGACAGGAGCAAGAGGCACGAGAGGGTCAAGGCCA
TCGACGTGACCGTGCCCCTGCAGTGCCTGGTCAGGGACTCCAAGCTCATCCTCACCGAGG
CCTCCAAGGCGGGGCTGCCTGGGTTCTATGACCCGTGTGTCGGGGAAGAGAAGAACCTGA
AAGTGCTCTACCAGTTCCGAGGCGTGCTGCATCAGGTGATGGCGCTGGACAGCGAGGCGC
TCAGGATACCAAAGCAGTCTCACAGGATTGATACTGATGGATAAAGGGCTTGAGAAACCG
GATTAAAAGGAGGCTGCAAAAAATCATTTCCTGGGAATCTACAAATTTGGAAGCAGGGAA
AATACCCAGACCTGAGGCGTGTTTATTTCGTGTCTCCGTTGGAGGGTGGTGCCGGATGGG
TCACGTGAAGGGGCACGGTCACGGGCACCGCCTCCCCGGGGGGCCAAGCTGGGGCCCGAG
CCGCCGCTCTTCCCAAGGATCGAGTCCCCGCAGGCAGGGGCCTCCCCAGGCCCCTGAGCT
CAGGCGCCGGCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61869812|ref|XP_613196.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61869812|ref|XP_613196.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1258, gnl|bosTau2|chr11 (34272554-34271301)
               

               
               1-1258, gnl|Hg17|chr1 (6645882-6629715)
               

               
               1-1258, gnl|Mm7|chr4 (150960445-150970533)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1258, gnl|bosTau2|chr11 (34272554-34271301)
               

               
               1-1258, gnl|Hg17|chr1 (6645882-6629715)
               

               
               1-1258, gnl|Mm7|chr4 (150960445-150970533)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cbe (0.239234)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               cty (0.10408)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               cty (0.10408)

	1-1258, gnl\|bosTau2\|chr11 (34272554-34271301)
	1-1258, gnl\|Hg17\|chr1 (6645882-6629715)
	1-1258, gnl\|Mm7\|chr4 (150960445-150970533)

	cbe (0.239234)
	spl (0.143184)
	nca (0.136874)
	pla (0.133672)
	eep (0.122564)
	cly (0.120642)
	cty (0.10408)