Non-Coding RNA Search

Ss1.1-Pig4-TMW8057M15.3

Sequence:


               
               CGTGGAGACCCTGGGTGTCCCCTGCTTCCTGGGGGGGATGGCTCGGGGACTGCTGGGTCG
CAACCACCCCCTCCACATCCGGCAGAACCGCAGTGCCGCCCTGAAGAAGGCAGATGTTGT
CATCCTGGCAGGAATGGTGTGTGACTTCCGCCTGTCCTATGGCCGTGTCCTCAGCCGCAG
CAGCAAGATCATCATTGTCAACCGTGACCGAAAAGAGATGTTGATCAACTCAGACATATT
CTGGAAGCCGCAGGAGGCTGTGCAGGGAGACGTGGGCTCTTTCGTGGTCAAGCTGGTGGA
GGGCCTTCAGGGCCAAACGTGGGCCTCGGACTGGGCAGAGGAGCTGCGGCAAGCTGATCG
GCAGAAGGAGCAGACCTTTAAGGAGAAGGCGTTGATGCCTCTAGCCCAGCACCTAAACCC
AGTGCGGGTCCTGCAGTTAGTGGAGGAAACTCTGCCAGACAACTCTATCCTGGTGGTTGA
TGGTGGGGACTTCGTGGGGACTGCTGCCCACCTGGTGCAACCCCGTGGCCCCCTGTGCTG
GCTTGATCCTGGCGCCTTTGGGACTCTGGGGGTTGGTGCAGGATTTGCACTTGGGGCCAA
ACTGTGTCGGCCAGATGCTGAGGTCTGGTGCCTGTTTGGGGATGGAGCCTTTGGCTACAG
CCTCATCGAATTTGACACCTTCGTCAGACACAAGATCCCAGTGATGGCCTTAATAGGGAA
TGATGCTGGTTGGACCCAGATTTCTCGGGAGCAGGTGCCCTCTCTGGGCAGCAATGTGGC
CTGTGGCCTGGCTTACACTGATTATCACAAGGCAGCCATGGGACTGGGGGCCCAGGGCTT
GCTGCTTTCACGAGAGAGTGAGGATCAGGTGGTCAAGGTGCTGCGTGATGCCCAGCAGCA
GTGCCAAGATGGCCACCCGGTTGTGGTCAACATCCTCATCGGGAGGACAGACTTCCGAGA
TGGCTCCATTGCCGTGTAGGACCTCAGGGGTCAGTGCTCTTGGCTCTCTTCCCACCCCTG
GACTGTGCCTAGCTGGTTTGGAGTCTCATCCTTGCCTGCCCTGGGCCTATCCTCTGAGGC
CCAGTGACTCTGCAACCCTCCCTGAGGACAGGGAGGGTCTGGAGGGGTCAGGGCTCAGAG
GCTCCTTGGCAGCACAGAGCCCTTGGGCCTTTTTCTTTGTGGGCCCAATGGTGCCCTTTC
TCCCCTCCTCTTTCACACACTGAATAAACCACCTCTGGTCCACATGGGCCCAAGTACTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTGGAGACCCTGGGTGTCCCCTGCTTCCTGGGGGGGATGGCTCGGGGACTGCTGGGTCG
CAACCACCCCCTCCACATCCGGCAGAACCGCAGTGCCGCCCTGAAGAAGGCAGATGTTGT
CATCCTGGCAGGAATGGTGTGTGACTTCCGCCTGTCCTATGGCCGTGTCCTCAGCCGCAG
CAGCAAGATCATCATTGTCAACCGTGACCGAAAAGAGATGTTGATCAACTCAGACATATT
CTGGAAGCCGCAGGAGGCTGTGCAGGGAGACGTGGGCTCTTTCGTGGTCAAGCTGGTGGA
GGGCCTTCAGGGCCAAACGTGGGCCTCGGACTGGGCAGAGGAGCTGCGGCAAGCTGATCG
GCAGAAGGAGCAGACCTTTAAGGAGAAGGCGTTGATGCCTCTAGCCCAGCACCTAAACCC
AGTGCGGGTCCTGCAGTTAGTGGAGGAAACTCTGCCAGACAACTCTATCCTGGTGGTTGA
TGGTGGGGACTTCGTGGGGACTGCTGCCCACCTGGTGCAACCCCGTGGCCCCCTGTGCTG
GCTTGATCCTGGCGCCTTTGGGACTCTGGGGGTTGGTGCAGGATTTGCACTTGGGGCCAA
ACTGTGTCGGCCAGATGCTGAGGTCTGGTGCCTGTTTGGGGATGGAGCCTTTGGCTACAG
CCTCATCGAATTTGACACCTTCGTCAGACACAAGATCCCAGTGATGGCCTTAATAGGGAA
TGATGCTGGTTGGACCCAGATTTCTCGGGAGCAGGTGCCCTCTCTGGGCAGCAATGTGGC
CTGTGGCCTGGCTTACACTGATTATCACAAGGCAGCCATGGGACTGGGGGCCCAGGGCTT
GCTGCTTTCACGAGAGAGTGAGGATCAGGTGGTCAAGGTGCTGCGTGATGCCCAGCAGCA
GTGCCAAGATGGCCACCCGGTTGTGGTCAACATCCTCATCGGGAGGACAGACTTCCGAGA
TGGCTCCATTGCCGTGTAGGACCTCAGGGGTCAGTGCTCTTGGCTCTCTTCCCACCCCTG
GACTGTGCCTAGCTGGTTTGGAGTCTCATCCTTGCCTGCCCTGGGCCTATCCTCTGAGGC
CCAGTGACTCTGCAACCCTCCCTGAGGACAGGGAGGGTCTGGAGGGGTCAGGGCTCAGAG
GCTCCTTGGCAGCACAGAGCCCTTGGGCCTTTTTCTTTGTGGGCCCAATGGTGCCCTTTC
TCCCCTCCTCTTTCACACACTGAATAAACCACCTCTGGTCCACATGGGCCCAAGTACTCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|3184263|gb|AAC18916.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3184263|gb|AAC18916.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               800-918, - strand, RNAz p=0.721617
               

               
               1037-1210, - strand, RNAz p=0.999244

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               800-918, - strand, RNAz p=0.721617
               

               
               1037-1210, - strand, RNAz p=0.999244

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               1-199, gnl|bosTau2|chr7 (7119825-7119627)
               

               
               1-199, gnl|Hg17|chr19 (15091107-15089759)
               


               
               222-740, gnl|bosTau2|chr7 (7119625-7119110)
               

               
               222-740, gnl|Hg17|chr19 (15089736-15087437)
               


               
               800-1210, gnl|bosTau2|chr7 (7136917-7136507)
               

               
               800-1210, gnl|Hg17|chr19 (15087242-15086846)
               

               
               800-1210, gnl|Mm7|chr10 (78238673-78239052)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-199, gnl|bosTau2|chr7 (7119825-7119627)
               

               
               1-199, gnl|Hg17|chr19 (15091107-15089759)
               


               
               222-740, gnl|bosTau2|chr7 (7119625-7119110)
               

               
               222-740, gnl|Hg17|chr19 (15089736-15087437)
               


               
               800-1210, gnl|bosTau2|chr7 (7136917-7136507)
               

               
               800-1210, gnl|Hg17|chr19 (15087242-15086846)
               

               
               800-1210, gnl|Mm7|chr10 (78238673-78239052)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cov (0.396458)
               

               
               cga (0.279096)
               

               
               ute (0.265569)
               

               
               jej (0.197844)
               

               
               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               cly (0.120642)
               

               
               cty (0.10408)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.396458)
               

               
               cga (0.279096)
               

               
               ute (0.265569)
               

               
               jej (0.197844)
               

               
               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               cly (0.120642)
               

               
               cty (0.10408)

	800-918, - strand, RNAz p=0.721617
	1037-1210, - strand, RNAz p=0.999244

	1-199, gnl\|bosTau2\|chr7 (7119825-7119627)
	1-199, gnl\|Hg17\|chr19 (15091107-15089759)

	222-740, gnl\|bosTau2\|chr7 (7119625-7119110)
	222-740, gnl\|Hg17\|chr19 (15089736-15087437)

	800-1210, gnl\|bosTau2\|chr7 (7136917-7136507)
	800-1210, gnl\|Hg17\|chr19 (15087242-15086846)
	800-1210, gnl\|Mm7\|chr10 (78238673-78239052)

	cov (0.396458)
	cga (0.279096)
	ute (0.265569)
	jej (0.197844)
	nje (0.16592)
	hyp (0.142837)
	cly (0.120642)
	cty (0.10408)