Ss1.1-Pig4-TMW8057M19.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACAGCTATGATTTAAGCAGTGCAATTAGTGTCTTAGTACCACTTGGGGGACCTGTTTTAT GCAGAGATGAAATGGAAGAATGGTCAGCCTCTGAAGCTAGTTTATTTGAAGAGGCACTGG AAAAATATGGCAAAGACTTCAATGACATACGTCAAGATTTTCTCCCTTGGAAATCATTGA CTAGCATCATTGAATATTATTACATGTGGAAAACTACTGACAGATACGTGCAGCAGAAAC GTCTAAAAGCAGCAGAAGCTGAGAGTAAACTGAAACAAGTGTATATCCCAACTTACAAAC CAAATCCCAACCAAATATCCACCAGCAATGGCAAACCTGGCGCTGTGAATGGAGCCGTGG GAACCACGTTCCAGCCGCAGAATCCTCTCCTGGGGCGAGCCTGTGAGAGCTGCTATGCTA CACAGTCTCATCAGTGGTATTCTTGGGGCCCACCCAATATGCAGTGTAGATTATGTGCAA CCTGTTGGCTCTATTGGAAGAAGTATGGAGGCCTGAAAATGCCCACCCAATCAGAAGAGG AGAAGTTATCTCCCAGCCCAACTACAGAGGATCCTCGAGTTAGAAGTCACATGTCTCGCC AGGCCATGCAGGGGATGCCAGTCCGAAACACTGGGAGTCCAAAGTCTGCAGTGAAGACCC GCCAAGCTTTCTTCCTTCACACTACATATTTCACAAAATTTGCTCGTCAGGTCTGCAAAA ATACCCTTCGGCTGCGGCAGGCAGCAAGACGGCCGTTTGTTCCTATTAATTATGCTGCCA TTAGGGCAGAATGTAAGATGCTTTTAAATTCTTAACCTTATATGTTGTGCTTCTGACCAT TTTTTTTTTTCTCTCTCTCTCTCTCTGTTTTTGTTTGCAATAAACATAAGTTCTTGTGTA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACAGCTATGATTTAAGCAGTGCAATTAGTGTCTTAGTACCACTTGGGGGACCTGTTTTAT GCAGAGATGAAATGGAAGAATGGTCAGCCTCTGAAGCTAGTTTATTTGAAGAGGCACTGG AAAAATATGGCAAAGACTTCAATGACATACGTCAAGATTTTCTCCCTTGGAAATCATTGA CTAGCATCATTGAATATTATTACATGTGGAAAACTACTGACAGATACGTGCAGCAGAAAC GTCTAAAAGCAGCAGAAGCTGAGAGTAAACTGAAACAAGTGTATATCCCAACTTACAAAC CAAATCCCAACCAAATATCCACCAGCAATGGCAAACCTGGCGCTGTGAATGGAGCCGTGG GAACCACGTTCCAGCCGCAGAATCCTCTCCTGGGGCGAGCCTGTGAGAGCTGCTATGCTA CACAGTCTCATCAGTGGTATTCTTGGGGCCCACCCAATATGCAGTGTAGATTATGTGCAA CCTGTTGGCTCTATTGGAAGAAGTATGGAGGCCTGAAAATGCCCACCCAATCAGAAGAGG AGAAGTTATCTCCCAGCCCAACTACAGAGGATCCTCGAGTTAGAAGTCACATGTCTCGCC AGGCCATGCAGGGGATGCCAGTCCGAAACACTGGGAGTCCAAAGTCTGCAGTGAAGACCC GCCAAGCTTTCTTCCTTCACACTACATATTTCACAAAATTTGCTCGTCAGGTCTGCAAAA ATACCCTTCGGCTGCGGCAGGCAGCAAGACGGCCGTTTGTTCCTATTAATTATGCTGCCA TTAGGGCAGAATGTAAGATGCTTTTAAATTCTTAACCTTATATGTTGTGCTTCTGACCAT TTTTTTTTTTCTCTCTCTCTCTCTCTGTTTTTGTTTGCAATAAACATAAGTTCTTGTGTA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 1-174, gnl|bosTau2|chr11 (22024877-22025050) | |
| 1-174, gnl|canFam2|chr17 (37359276-37359498) | |
| 1-174, gnl|danRer3|chr17 (44761932-44761715) | |
| 1-174, gnl|dasNov1|scaffold_3087 (115430-115643) | |
| 1-174, gnl|echTel1|scaffold_224074 (5046-4823) | |
| 1-174, gnl|fr1|chrUn (130608698-130608904) | |
| 1-174, gnl|galGal2|chr3 (20343509-20343726) | |
| 1-174, gnl|hg17|chr2 (42821175-42821397) | |
| 1-174, gnl|Hg17|chr2 (42821220-42821393) | |
| 1-174, gnl|loxAfr1|scaffold_652 (108061-108284) | |
| 1-174, gnl|mm7|chr17 (82070011-82070234) | |
| 1-174, gnl|Mm7|chr17 (82070057-82070230) | |
| 1-174, gnl|monDom2|scaffold_1 (900970-901193) | |
| 1-174, gnl|oryCun1|scaffold_208187 (18104-17892) | |
| 1-174, gnl|panTro1|chr12 (44459916-44460143) | |
| 1-174, gnl|rheMac2|chr13 (42802480-42802702) | |
| 1-174, gnl|rn3|chr6 (7140455-7140678) | |
| 1-174, gnl|tetNig1|chrUn_random (115175743-115175949) | |
| 1-174, gnl|xenTro1|scaffold_1046 (275961-275739) | |
| 296-415, gnl|bosTau2|chr11 (22043957-22044076) | |
| 296-415, gnl|canFam2|chr17 (37376485-37376627) | |
| 296-415, gnl|danRer3|chr17 (44758273-44758136) | |
| 296-415, gnl|dasNov1|scaffold_12011 (41415-41557) | |
| 296-415, gnl|echTel1|scaffold_309915 (53663-53805) | |
| 296-415, gnl|fr1|chrUn (130610189-130610334) | |
| 296-415, gnl|galGal2|chr3 (20355352-20355484) | |
| 296-415, gnl|hg17|chr2 (42842984-42843126) | |
| 296-415, gnl|Hg17|chr2 (42842988-42843107) | |
| 296-415, gnl|loxAfr1|scaffold_652 (124660-124802) | |
| 296-415, gnl|mm7|chr17 (82083364-82083506) | |
| 296-415, gnl|Mm7|chr17 (82083368-82083487) | |
| 296-415, gnl|monDom2|scaffold_1 (923751-923901) | |
| 296-415, gnl|oryCun1|scaffold_208187 (3215-3070) | |
| 296-415, gnl|panTro1|chr12 (44482084-44482226) | |
| 296-415, gnl|rheMac2|chr13 (42825078-42825220) | |
| 296-415, gnl|rn3|chr6 (7154222-7154364) | |
| 296-415, gnl|tetNig1|chrUn_random (115177157-115177283) | |
| 296-415, gnl|xenTro1|scaffold_1046 (273550-273405) | |
| 417-543, gnl|bosTau2|chr21 (49389158-49389032) | |
| 417-543, gnl|Hg17|chr14 (105001797-105001923) | |
| 417-543, gnl|Mm7|chr12 (110656260-110656386) | |
| 568-899, gnl|bosTau2|chr11 (22047982-22048313) | |
| 568-899, gnl|Hg17|chr2 (42847663-42848001) | |
| 568-899, gnl|Mm7|chr17 (82086987-82087321) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-174, gnl|bosTau2|chr11 (22024877-22025050) | |
| 1-174, gnl|canFam2|chr17 (37359276-37359498) | |
| 1-174, gnl|danRer3|chr17 (44761932-44761715) | |
| 1-174, gnl|dasNov1|scaffold_3087 (115430-115643) | |
| 1-174, gnl|echTel1|scaffold_224074 (5046-4823) | |
| 1-174, gnl|fr1|chrUn (130608698-130608904) | |
| 1-174, gnl|galGal2|chr3 (20343509-20343726) | |
| 1-174, gnl|hg17|chr2 (42821175-42821397) | |
| 1-174, gnl|Hg17|chr2 (42821220-42821393) | |
| 1-174, gnl|loxAfr1|scaffold_652 (108061-108284) | |
| 1-174, gnl|mm7|chr17 (82070011-82070234) | |
| 1-174, gnl|Mm7|chr17 (82070057-82070230) | |
| 1-174, gnl|monDom2|scaffold_1 (900970-901193) | |
| 1-174, gnl|oryCun1|scaffold_208187 (18104-17892) | |
| 1-174, gnl|panTro1|chr12 (44459916-44460143) | |
| 1-174, gnl|rheMac2|chr13 (42802480-42802702) | |
| 1-174, gnl|rn3|chr6 (7140455-7140678) | |
| 1-174, gnl|tetNig1|chrUn_random (115175743-115175949) | |
| 1-174, gnl|xenTro1|scaffold_1046 (275961-275739) | |
| 296-415, gnl|bosTau2|chr11 (22043957-22044076) | |
| 296-415, gnl|canFam2|chr17 (37376485-37376627) | |
| 296-415, gnl|danRer3|chr17 (44758273-44758136) | |
| 296-415, gnl|dasNov1|scaffold_12011 (41415-41557) | |
| 296-415, gnl|echTel1|scaffold_309915 (53663-53805) | |
| 296-415, gnl|fr1|chrUn (130610189-130610334) | |
| 296-415, gnl|galGal2|chr3 (20355352-20355484) | |
| 296-415, gnl|hg17|chr2 (42842984-42843126) | |
| 296-415, gnl|Hg17|chr2 (42842988-42843107) | |
| 296-415, gnl|loxAfr1|scaffold_652 (124660-124802) | |
| 296-415, gnl|mm7|chr17 (82083364-82083506) | |
| 296-415, gnl|Mm7|chr17 (82083368-82083487) | |
| 296-415, gnl|monDom2|scaffold_1 (923751-923901) | |
| 296-415, gnl|oryCun1|scaffold_208187 (3215-3070) | |
| 296-415, gnl|panTro1|chr12 (44482084-44482226) | |
| 296-415, gnl|rheMac2|chr13 (42825078-42825220) | |
| 296-415, gnl|rn3|chr6 (7154222-7154364) | |
| 296-415, gnl|tetNig1|chrUn_random (115177157-115177283) | |
| 296-415, gnl|xenTro1|scaffold_1046 (273550-273405) | |
| 417-543, gnl|bosTau2|chr21 (49389158-49389032) | |
| 417-543, gnl|Hg17|chr14 (105001797-105001923) | |
| 417-543, gnl|Mm7|chr12 (110656260-110656386) | |
| 568-899, gnl|bosTau2|chr11 (22047982-22048313) | |
| 568-899, gnl|Hg17|chr2 (42847663-42848001) | |
| 568-899, gnl|Mm7|chr17 (82086987-82087321) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| sag (0.548145) | |
| cmu (0.186393) | |
| mcp (0.170648) | |
| pla (0.133672) | |
| cly (0.120642) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sag (0.548145) | |
| cmu (0.186393) | |
| mcp (0.170648) | |
| pla (0.133672) | |
| cly (0.120642) |