Non-Coding RNA Search

Ss1.1-Pig4-TMW8057M23.3

Sequence:


               
               AGTGGCTGTGAGGCAGCTGCCGTGTCGGTGTCGTGGCCCGAGGCGAGGCGGGGGCCCGCG
AGCCCTAAGGAGGCCAGCGAGCGATCGAGTGGGGCGGGAGGGGCGGACGGCGCGGCGGCA
GCGGGCGCTGGAGTAGCCTACGAGGGAGCGCAGAGAACAGGCGCCCGCGCGCTCGCGGTG
GCAGGAGCAACCCGCACGCCGCTCTCTCTCAGTAGGGGACTTGCAGTTGCAATATGACTT
TGGAGGAATTCTCGGCTGGAGAGCAGAAGACTGAAAGGATGGATAAGGTGGGGGATGCCC
TCGAAGAAGTGCTCAGCAAAGCCCTGAGTCAGCGCACAATCACCGTCGGGGTGTACGAGG
CGGCCAAGCTGCTTAACGTCGACCCGGATAACGTGGTGCTGTGCCTGCTGGCGGCGGACG
AGGACGACGACAGGGACGTGGCTCTGCAGATCCACTTCACCCTGATCCAAGCGTTTTGCT
GTGAGAACGACATCGACATCCTACGAGTCAGCAACCCCGGCCGGCTGGCCGAGCTCCTGC
TCCTGGAGACGGACGCGGGCCCCACCGCGAGCGAGGGCGCAGAGCAGCCCCCGGACCTGC
ACTGCGTGCTGGTGACGAATCCACATTCATCGCAGTGGAAGGATCCTGCCTTAAGTCAAC
TTATTTGTTTTTGCCGGGAAAGTCGCTACATGGATCAGTGGGTTCCAGTGATTAATCTTC
CTGAACGGTGATGGCATCTGAATGAAAATAACTGAACCAAATTGCACTGAAGTTTTGAAA
TACCTTTGTAGTTACTCAAGCAGTTACTCCCTACACTGATGCAAGGATTACAGAAACTGA
TGTCAAGGGGCTGAGTGAGTTCAACTACATGATCCAGGAGCCCGAAGATAGATGACTTTG
CAGATGGAAAGAGGTAAAAATGAAGAAGGAAGCTGTGTGGAAACAGAAATGCAAGTCAAA
AGGAACAAAAATTACAAAGAACCACGCAGGATGGAAAACAAAACTATGTATTAATTTAGG
ATGGTTGGAGTTACATTTAAATAAACCAAATATGTTTTGTTAAAGTTTAAATGTTCAGCA
GTAGTTTGGGTATTTTGGGTTTATATGCCCTCAAGTAAAAAAAGCAGAAAGGGTTAATCA
TATTTTAAAACCATATTTTATTGTATTTTGATGAGATGTTAAATTCTCAAAGTTTTATTA
TAAATTGTACTAAGTTATTTTATGACATGAAAGGTTATTTATGCTATAAATTTTTTTGAA
ACACAATACCTACAATAAACTGGTATGGAATAATTGCATCATTTCTTAATGTGTACACTT
GTTTCTTTTAACTTGGACTTTCTTTTAAAGAAGTTGTTTTAATATGAAAAAATTAAAACC
CTTCTGAATTCAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGGCTGTGAGGCAGCTGCCGTGTCGGTGTCGTGGCCCGAGGCGAGGCGGGGGCCCGCG
AGCCCTAAGGAGGCCAGCGAGCGATCGAGTGGGGCGGGAGGGGCGGACGGCGCGGCGGCA
GCGGGCGCTGGAGTAGCCTACGAGGGAGCGCAGAGAACAGGCGCCCGCGCGCTCGCGGTG
GCAGGAGCAACCCGCACGCCGCTCTCTCTCAGTAGGGGACTTGCAGTTGCAATATGACTT
TGGAGGAATTCTCGGCTGGAGAGCAGAAGACTGAAAGGATGGATAAGGTGGGGGATGCCC
TCGAAGAAGTGCTCAGCAAAGCCCTGAGTCAGCGCACAATCACCGTCGGGGTGTACGAGG
CGGCCAAGCTGCTTAACGTCGACCCGGATAACGTGGTGCTGTGCCTGCTGGCGGCGGACG
AGGACGACGACAGGGACGTGGCTCTGCAGATCCACTTCACCCTGATCCAAGCGTTTTGCT
GTGAGAACGACATCGACATCCTACGAGTCAGCAACCCCGGCCGGCTGGCCGAGCTCCTGC
TCCTGGAGACGGACGCGGGCCCCACCGCGAGCGAGGGCGCAGAGCAGCCCCCGGACCTGC
ACTGCGTGCTGGTGACGAATCCACATTCATCGCAGTGGAAGGATCCTGCCTTAAGTCAAC
TTATTTGTTTTTGCCGGGAAAGTCGCTACATGGATCAGTGGGTTCCAGTGATTAATCTTC
CTGAACGGTGATGGCATCTGAATGAAAATAACTGAACCAAATTGCACTGAAGTTTTGAAA
TACCTTTGTAGTTACTCAAGCAGTTACTCCCTACACTGATGCAAGGATTACAGAAACTGA
TGTCAAGGGGCTGAGTGAGTTCAACTACATGATCCAGGAGCCCGAAGATAGATGACTTTG
CAGATGGAAAGAGGTAAAAATGAAGAAGGAAGCTGTGTGGAAACAGAAATGCAAGTCAAA
AGGAACAAAAATTACAAAGAACCACGCAGGATGGAAAACAAAACTATGTATTAATTTAGG
ATGGTTGGAGTTACATTTAAATAAACCAAATATGTTTTGTTAAAGTTTAAATGTTCAGCA
GTAGTTTGGGTATTTTGGGTTTATATGCCCTCAAGTAAAAAAAGCAGAAAGGGTTAATCA
TATTTTAAAACCATATTTTATTGTATTTTGATGAGATGTTAAATTCTCAAAGTTTTATTA
TAAATTGTACTAAGTTATTTTATGACATGAAAGGTTATTTATGCTATAAATTTTTTTGAA
ACACAATACCTACAATAAACTGGTATGGAATAATTGCATCATTTCTTAATGTGTACACTT
GTTTCTTTTAACTTGGACTTTCTTTTAAAGAAGTTGTTTTAATATGAAAAAATTAAAACC
CTTCTGAATTCAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61879713|ref|XP_581752.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61879713|ref|XP_581752.1|

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

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               1-278, gnl|bosTau2|chr3 (53108789-53108516)
               

               
               1-278, gnl|Hg17|chr1 (67862905-67863243)
               


               
               381-508, gnl|bosTau2|chr7 (17900025-17899898)
               

               
               381-508, gnl|Hg17|chr19 (2428028-2428155)
               

               
               381-508, gnl|Mm7|chr10 (80720636-80720763)
               


               
               617-1392, gnl|bosTau2|chr3 (53106351-53105578)
               

               
               617-1392, gnl|Hg17|chr1 (67865364-67866086)
               

               
               617-1392, gnl|Mm7|chr6 (67017558-67016842)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-278, gnl|bosTau2|chr3 (53108789-53108516)
               

               
               1-278, gnl|Hg17|chr1 (67862905-67863243)
               


               
               381-508, gnl|bosTau2|chr7 (17900025-17899898)
               

               
               381-508, gnl|Hg17|chr19 (2428028-2428155)
               

               
               381-508, gnl|Mm7|chr10 (80720636-80720763)
               


               
               617-1392, gnl|bosTau2|chr3 (53106351-53105578)
               

               
               617-1392, gnl|Hg17|chr1 (67865364-67866086)
               

               
               617-1392, gnl|Mm7|chr6 (67017558-67016842)

Expressed library(ies): 40 entry(ies)

More info

Expressed library(ies): 40 entry(ies)

Help | Less info


               
               ova (1.42045)
               

               
               fat (0.884564)
               

               
               lin (0.728014)
               

               
               ret (0.643666)
               

               
               lyg (0.532411)
               

               
               sug (0.509165)
               

               
               bfe (0.449573)
               

               
               kid (0.389206)
               

               
               thg (0.380373)
               

               
               sto (0.359648)
               

               
               vin (0.332557)
               

               
               cki (0.330469)
               

               
               cje (0.330469)
               

               
               mga (0.32041)
               

               
               ski (0.29347)
               

               
               bla (0.248694)
               

               
               pgl (0.236967)
               

               
               hea (0.204499)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 40 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (1.42045)
               

               
               fat (0.884564)
               

               
               lin (0.728014)
               

               
               ret (0.643666)
               

               
               lyg (0.532411)
               

               
               sug (0.509165)
               

               
               bfe (0.449573)
               

               
               kid (0.389206)
               

               
               thg (0.380373)
               

               
               sto (0.359648)
               

               
               vin (0.332557)
               

               
               cki (0.330469)
               

               
               cje (0.330469)
               

               
               mga (0.32041)
               

               
               ski (0.29347)
               

               
               bla (0.248694)
               

               
               pgl (0.236967)
               

               
               hea (0.204499)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	1-278, gnl\|bosTau2\|chr3 (53108789-53108516)
	1-278, gnl\|Hg17\|chr1 (67862905-67863243)

	381-508, gnl\|bosTau2\|chr7 (17900025-17899898)
	381-508, gnl\|Hg17\|chr19 (2428028-2428155)
	381-508, gnl\|Mm7\|chr10 (80720636-80720763)

	617-1392, gnl\|bosTau2\|chr3 (53106351-53105578)
	617-1392, gnl\|Hg17\|chr1 (67865364-67866086)
	617-1392, gnl\|Mm7\|chr6 (67017558-67016842)

	ova (1.42045)
	fat (0.884564)
	lin (0.728014)
	ret (0.643666)
	lyg (0.532411)
	sug (0.509165)
	bfe (0.449573)
	kid (0.389206)
	thg (0.380373)
	sto (0.359648)
	vin (0.332557)
	cki (0.330469)
	cje (0.330469)
	mga (0.32041)
	ski (0.29347)
	bla (0.248694)
	pgl (0.236967)
	hea (0.204499)
	eje (0.197668)
	aor (0.195274)
	col (0.195008)
	cmu (0.186393)
	sag (0.182715)
	mgm (0.180343)
	gul (0.177588)
	ill (0.175593)
	sin (0.174948)
	rec (0.17307)
	nje (0.16592)
	tbr (0.154178)
	isp (0.150376)
	liv (0.146284)
	csk (0.140746)
	cst (0.140036)
	pla (0.133672)
	ese (0.126502)
	tra (0.123092)
	eep (0.122564)
	spc (0.113366)
	cty (0.10408)