Non-Coding RNA Search

Ss1.1-Pig4-TMW8057M24.5

Sequence:


               
               GTTACAAGGGACCAGATGCTTGGAAAATATGGAATGTCATCTATGAAGAAAACTGTTTTA
AGCCACAGACAATTAAAAGACCTTTAAATCCTTTGGCTTCTGGTCAAGGGAAAAGTGAAG
AGAATACCTTTTACAGTTGGCTAGAAGGTCTCTGTGTAGAAAAGAGAGCATTCTATAGAC
TTATATCTGGCCTCCACGCAAGCATTAATGTGCATTTGAGTGCACGGTATCTTCTACAAG
ATACCTGGTTGGAAAAAAAATGGGGACACAACATTACAGAATTTCAGCAGCGATTTGATG
GAATTTTGACTGAAGGAGAAGGTCCAAGAAGGCTTAAGAACTTGTATTTTCTCTATTTAA
TAGAATTAAGGGCTTTATCTAAAGTGGTACCATTCTTCGAGCGCCCAGATTTTCAGCTCT
TTACTGGAAATAAAGTTCAGGATGCAGAGAACAAAATGTTACTTCTGGACATACTTCATG
AAATCAAATCATTTCCTTTGCATTTTGATGAGAATTCATTTTTTGCTGGAGATAAAAAAG
AAGCGAACAAACTAAAGGAGGATTTTCGACTGCATTTTAGAAATATTTCAAGAATCATGG
ATTGTGTTGGTTGTTTAAAATGTCGACTATGGGGAAAGCTTCAGACTCAAGGATTGGGCA
CTGCCCTGAAGATCTTGTTTTCTGAGAAACTGATAGCAAACATGCCAGAAAGTGGGCCCA
GTTATGAATTCCATCTAACAAGACAAGAAATAGTATCATTATTTAATGCATTTGGAAGAA
TTTCTACAAGTGTGAAAGAATTAGAAAACTTCAGGAACTTGTTACAAAATATTCATTAAA
GAAAACAAGTTGAAATGTGCCTGTTTCTGGACAGTGGAAGCCAAAGAATGGAATTTCATT
CAAAGGCAAAATAGCAATGACAGTCTTAAGCCAAACATTTTATATAAAGCTGCTTTTGTA
AAAGGGAATTATATTAATTATATTGTTTTAAGTAAACAAAATTTTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTACAAGGGACCAGATGCTTGGAAAATATGGAATGTCATCTATGAAGAAAACTGTTTTA
AGCCACAGACAATTAAAAGACCTTTAAATCCTTTGGCTTCTGGTCAAGGGAAAAGTGAAG
AGAATACCTTTTACAGTTGGCTAGAAGGTCTCTGTGTAGAAAAGAGAGCATTCTATAGAC
TTATATCTGGCCTCCACGCAAGCATTAATGTGCATTTGAGTGCACGGTATCTTCTACAAG
ATACCTGGTTGGAAAAAAAATGGGGACACAACATTACAGAATTTCAGCAGCGATTTGATG
GAATTTTGACTGAAGGAGAAGGTCCAAGAAGGCTTAAGAACTTGTATTTTCTCTATTTAA
TAGAATTAAGGGCTTTATCTAAAGTGGTACCATTCTTCGAGCGCCCAGATTTTCAGCTCT
TTACTGGAAATAAAGTTCAGGATGCAGAGAACAAAATGTTACTTCTGGACATACTTCATG
AAATCAAATCATTTCCTTTGCATTTTGATGAGAATTCATTTTTTGCTGGAGATAAAAAAG
AAGCGAACAAACTAAAGGAGGATTTTCGACTGCATTTTAGAAATATTTCAAGAATCATGG
ATTGTGTTGGTTGTTTAAAATGTCGACTATGGGGAAAGCTTCAGACTCAAGGATTGGGCA
CTGCCCTGAAGATCTTGTTTTCTGAGAAACTGATAGCAAACATGCCAGAAAGTGGGCCCA
GTTATGAATTCCATCTAACAAGACAAGAAATAGTATCATTATTTAATGCATTTGGAAGAA
TTTCTACAAGTGTGAAAGAATTAGAAAACTTCAGGAACTTGTTACAAAATATTCATTAAA
GAAAACAAGTTGAAATGTGCCTGTTTCTGGACAGTGGAAGCCAAAGAATGGAATTTCATT
CAAAGGCAAAATAGCAATGACAGTCTTAAGCCAAACATTTTATATAAAGCTGCTTTTGTA
AAAGGGAATTATATTAATTATATTGTTTTAAGTAAACAAAATTTTTTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12844604|dbj|BAB26428.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12844604|dbj|BAB26428.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               230-494, gnl|bosTau2|chr10 (7910978-7911240)
               

               
               230-494, gnl|Hg17|chr14 (52189795-52189530)
               

               
               230-494, gnl|Mm7|chr14 (40611420-40611161)
               


               
               777-975, gnl|bosTau2|chr10 (7917644-7917843)
               

               
               777-975, gnl|Hg17|chr14 (52180100-52179902)
               

               
               777-975, gnl|Mm7|chr14 (40604324-40604127)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               230-494, gnl|bosTau2|chr10 (7910978-7911240)
               

               
               230-494, gnl|Hg17|chr14 (52189795-52189530)
               

               
               230-494, gnl|Mm7|chr14 (40611420-40611161)
               


               
               777-975, gnl|bosTau2|chr10 (7917644-7917843)
               

               
               777-975, gnl|Hg17|chr14 (52180100-52179902)
               

               
               777-975, gnl|Mm7|chr14 (40604324-40604127)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               tes (0.207814)
               

               
               cmu (0.186393)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               cmu (0.186393)
               

               
               ldo (0.0970026)

	230-494, gnl\|bosTau2\|chr10 (7910978-7911240)
	230-494, gnl\|Hg17\|chr14 (52189795-52189530)
	230-494, gnl\|Mm7\|chr14 (40611420-40611161)

	777-975, gnl\|bosTau2\|chr10 (7917644-7917843)
	777-975, gnl\|Hg17\|chr14 (52180100-52179902)
	777-975, gnl\|Mm7\|chr14 (40604324-40604127)