Non-Coding RNA Search

Ss1.1-Pig4-TMW8057N22.5

Sequence:


               
               GTGGGAAGCCTAGTGGTAATCGTTTGCCTCTCCTTCTTCCTTCTCAGCTCCTGGGATTTC
ATCCCTGCAGTCTATGGCTTCATACTTTCTGTTCCAGATCTCACTCCAAACATTGGTCTC
TTCTGGTACTTCTTTGCAGAGATGTTTGAGCACTTCAGCCTCTTCTTTGTATGTGTGTTT
CAGATCAACGTCTTCTTCTACACCATCCCCTTAGCCATAAAGCTGAAGGAACACCCTGTC
TTCTTCATGTTCATCCAGATTGCCATCATCTCCATCTTCAAGTCCTACCCGACCGTGGGG
GATGTGGCCCTCTACATGGCCTTCTTCCCCGTGTGGAACCACCTCTACAGATTCCTGCGA
AACATCTTTGTCCTCACCTGCATCATTATCGCCTGCTCCCTGCTCTTCCCTGTCCTGTGG
CACCTCTGGATTTACGCAGGAAGTGCCAACTCCAATTTCTTTTATGCCATCACACTGACC
TTCAACGTTGGGCAGATCCTGCTCATCTCTGATTACTTCTACGCCTTCCTGCGGCGGGAG
TACTACCTCACACACGGTCTCTACCTGACCGCCAAGGACGGCACGGAGGCCATGCTTGTG
CTCAAGTAGGCCTGGCTGGGCACAGGGCTGCACGGACCTCAGGGGGCGAAAGGCCCAGAA
GCTGGGCCAAGCCCTCTAGCCAGCGTTGCCAGCAGGCAAGCCCTGGGGCAGATGAGGTTT
GAGTCCAGGGTCATGAATATCTGGCACCAGTGAGGAGCCAAGGCTGGCAGCAAGGCCTGT
GGGGCGGAGCCAGGAGTCTCCACCTGGCCCCCACTGTGTGGCTCTGCACACCAGGAGCCC
CTCCCAAGCAGGAAAGGGGAAGAAGCAGGTGAGCAGGGTTTGTTAGGCTGTGGCTACTTA
ATAAATGTTTCTTTTGTTATGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGGAAGCCTAGTGGTAATCGTTTGCCTCTCCTTCTTCCTTCTCAGCTCCTGGGATTTC
ATCCCTGCAGTCTATGGCTTCATACTTTCTGTTCCAGATCTCACTCCAAACATTGGTCTC
TTCTGGTACTTCTTTGCAGAGATGTTTGAGCACTTCAGCCTCTTCTTTGTATGTGTGTTT
CAGATCAACGTCTTCTTCTACACCATCCCCTTAGCCATAAAGCTGAAGGAACACCCTGTC
TTCTTCATGTTCATCCAGATTGCCATCATCTCCATCTTCAAGTCCTACCCGACCGTGGGG
GATGTGGCCCTCTACATGGCCTTCTTCCCCGTGTGGAACCACCTCTACAGATTCCTGCGA
AACATCTTTGTCCTCACCTGCATCATTATCGCCTGCTCCCTGCTCTTCCCTGTCCTGTGG
CACCTCTGGATTTACGCAGGAAGTGCCAACTCCAATTTCTTTTATGCCATCACACTGACC
TTCAACGTTGGGCAGATCCTGCTCATCTCTGATTACTTCTACGCCTTCCTGCGGCGGGAG
TACTACCTCACACACGGTCTCTACCTGACCGCCAAGGACGGCACGGAGGCCATGCTTGTG
CTCAAGTAGGCCTGGCTGGGCACAGGGCTGCACGGACCTCAGGGGGCGAAAGGCCCAGAA
GCTGGGCCAAGCCCTCTAGCCAGCGTTGCCAGCAGGCAAGCCCTGGGGCAGATGAGGTTT
GAGTCCAGGGTCATGAATATCTGGCACCAGTGAGGAGCCAAGGCTGGCAGCAAGGCCTGT
GGGGCGGAGCCAGGAGTCTCCACCTGGCCCCCACTGTGTGGCTCTGCACACCAGGAGCCC
CTCCCAAGCAGGAAAGGGGAAGAAGCAGGTGAGCAGGGTTTGTTAGGCTGTGGCTACTTA
ATAAATGTTTCTTTTGTTATGAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61841197|ref|XP_615141.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61841197|ref|XP_615141.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               81-879, + strand, RNAz p=0.878125
               

               
               494-732, - strand, RNAz p=0.929767

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-879, + strand, RNAz p=0.878125
               

               
               494-732, - strand, RNAz p=0.929767

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               81-231, gnl|bosTau2|chr13 (47335480-47335630)
               

               
               81-231, gnl|canFam2|chr24 (26670286-26670453)
               

               
               81-231, gnl|danRer3|chrUn (19604919-19604756)
               

               
               81-231, gnl|dasNov1|scaffold_18460 (34120-33954)
               

               
               81-231, gnl|fr1|chrUn (224971596-224971434)
               

               
               81-231, gnl|galGal2|chr20 (501207-501050)
               

               
               81-231, gnl|hg17|chr20 (32636897-32637063)
               

               
               81-231, gnl|Hg17|chr20 (32637048-32636898)
               

               
               81-231, gnl|loxAfr1|scaffold_127649 (1375-1209)
               

               
               81-231, gnl|mm7|chr2 (155039899-155040065)
               

               
               81-231, gnl|Mm7|chr2 (155040050-155039900)
               

               
               81-231, gnl|monDom2|scaffold_6 (12425808-12425644)
               

               
               81-231, gnl|panTro1|chr21 (34646768-34646934)
               

               
               81-231, gnl|rheMac2|chr10 (29982869-29982703)
               

               
               81-231, gnl|rn3|chr3 (145683845-145684011)
               

               
               81-231, gnl|tetNig1|chrUn_random (5802327-5802493)
               

               
               81-231, gnl|xenTro1|scaffold_35 (1367700-1367532)
               


               
               494-919, gnl|bosTau2|chr13 (47361291-47361715)
               

               
               494-919, gnl|Hg17|chr20 (32612446-32612016)
               

               
               494-919, gnl|Mm7|chr2 (155019509-155019103)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               81-231, gnl|bosTau2|chr13 (47335480-47335630)
               

               
               81-231, gnl|canFam2|chr24 (26670286-26670453)
               

               
               81-231, gnl|danRer3|chrUn (19604919-19604756)
               

               
               81-231, gnl|dasNov1|scaffold_18460 (34120-33954)
               

               
               81-231, gnl|fr1|chrUn (224971596-224971434)
               

               
               81-231, gnl|galGal2|chr20 (501207-501050)
               

               
               81-231, gnl|hg17|chr20 (32636897-32637063)
               

               
               81-231, gnl|Hg17|chr20 (32637048-32636898)
               

               
               81-231, gnl|loxAfr1|scaffold_127649 (1375-1209)
               

               
               81-231, gnl|mm7|chr2 (155039899-155040065)
               

               
               81-231, gnl|Mm7|chr2 (155040050-155039900)
               

               
               81-231, gnl|monDom2|scaffold_6 (12425808-12425644)
               

               
               81-231, gnl|panTro1|chr21 (34646768-34646934)
               

               
               81-231, gnl|rheMac2|chr10 (29982869-29982703)
               

               
               81-231, gnl|rn3|chr3 (145683845-145684011)
               

               
               81-231, gnl|tetNig1|chrUn_random (5802327-5802493)
               

               
               81-231, gnl|xenTro1|scaffold_35 (1367700-1367532)
               


               
               494-919, gnl|bosTau2|chr13 (47361291-47361715)
               

               
               494-919, gnl|Hg17|chr20 (32612446-32612016)
               

               
               494-919, gnl|Mm7|chr2 (155019509-155019103)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               nmm (0.132802)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               nmm (0.132802)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	81-879, + strand, RNAz p=0.878125
	494-732, - strand, RNAz p=0.929767

	81-231, gnl\|bosTau2\|chr13 (47335480-47335630)
	81-231, gnl\|canFam2\|chr24 (26670286-26670453)
	81-231, gnl\|danRer3\|chrUn (19604919-19604756)
	81-231, gnl\|dasNov1\|scaffold_18460 (34120-33954)
	81-231, gnl\|fr1\|chrUn (224971596-224971434)
	81-231, gnl\|galGal2\|chr20 (501207-501050)
	81-231, gnl\|hg17\|chr20 (32636897-32637063)
	81-231, gnl\|Hg17\|chr20 (32637048-32636898)
	81-231, gnl\|loxAfr1\|scaffold_127649 (1375-1209)
	81-231, gnl\|mm7\|chr2 (155039899-155040065)
	81-231, gnl\|Mm7\|chr2 (155040050-155039900)
	81-231, gnl\|monDom2\|scaffold_6 (12425808-12425644)
	81-231, gnl\|panTro1\|chr21 (34646768-34646934)
	81-231, gnl\|rheMac2\|chr10 (29982869-29982703)
	81-231, gnl\|rn3\|chr3 (145683845-145684011)
	81-231, gnl\|tetNig1\|chrUn_random (5802327-5802493)
	81-231, gnl\|xenTro1\|scaffold_35 (1367700-1367532)

	494-919, gnl\|bosTau2\|chr13 (47361291-47361715)
	494-919, gnl\|Hg17\|chr20 (32612446-32612016)
	494-919, gnl\|Mm7\|chr2 (155019509-155019103)

	fcc (0.197785)
	ill (0.175593)
	duo (0.172801)
	nmm (0.132802)
	med (0.116252)
	eje (0.0988338)