Non-Coding RNA Search

Ss1.1-Pig4-TMW8057O14.3

Sequence:


               
               GTTGAGGGCTCTGGGGTCTCTTTTCCCCCGCTGCCGCCTAGAGCAGGGGTGGAGTCGATA
TCTCGGACGGGGGGAGACTGCGGTGCCCCGAGGGGCTGCTTCTCAAGAGGGCTGTCATTT
CCGCAGGCCGGAAAGGGGAGCTCGGGTACCTTCCAGAGTGTGCAACCCAGCGCCCCTCTC
CCTCTTCCCGCGGAGTTTCGTCCTCGCCATGGCTGAGCTGATCCAGAAGAAGCTACAGGG
AGAAGTGGAGAAATATCAACAGCTACAGAAGGACTTGAGTAAGTCCATGTCAGGGAGGCA
GAAACTAGAAGCACAACTAACAGAAAATAATATCGTGAAGGAGGAACTGGCCCTGCTGGA
TGGATCCAACGTGGTCTTTAAACTTCTGGGTCCCGTGCTGGTCAAACAGGAGCTGGGAGA
GGCTCGAGCCACAGTGGGGAAAAGGCTGGACTACATCACAGCTGAAATTAAGCGATACGA
ATCCCAACTCCGGGAACTGGAGCGCCAGTCAGAGCAACAGAGGGAGACCCTGGCTCAGCT
GCAGCAGGAGTTCCAGCGGGCCCAGGCAGCCAAGGCAGGGGCTCCTGGGAAGGCCTGACC
CTGTGGAGGGGGGAGGGAGGGGGTGGGAATGAGGCAGCTCAAGGGTCTCTACTGTAGTGA
ATAAAATGTGAAAACACCTGGCTGTTTTCTCACCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGAGGGCTCTGGGGTCTCTTTTCCCCCGCTGCCGCCTAGAGCAGGGGTGGAGTCGATA
TCTCGGACGGGGGGAGACTGCGGTGCCCCGAGGGGCTGCTTCTCAAGAGGGCTGTCATTT
CCGCAGGCCGGAAAGGGGAGCTCGGGTACCTTCCAGAGTGTGCAACCCAGCGCCCCTCTC
CCTCTTCCCGCGGAGTTTCGTCCTCGCCATGGCTGAGCTGATCCAGAAGAAGCTACAGGG
AGAAGTGGAGAAATATCAACAGCTACAGAAGGACTTGAGTAAGTCCATGTCAGGGAGGCA
GAAACTAGAAGCACAACTAACAGAAAATAATATCGTGAAGGAGGAACTGGCCCTGCTGGA
TGGATCCAACGTGGTCTTTAAACTTCTGGGTCCCGTGCTGGTCAAACAGGAGCTGGGAGA
GGCTCGAGCCACAGTGGGGAAAAGGCTGGACTACATCACAGCTGAAATTAAGCGATACGA
ATCCCAACTCCGGGAACTGGAGCGCCAGTCAGAGCAACAGAGGGAGACCCTGGCTCAGCT
GCAGCAGGAGTTCCAGCGGGCCCAGGCAGCCAAGGCAGGGGCTCCTGGGAAGGCCTGACC
CTGTGGAGGGGGGAGGGAGGGGGTGGGAATGAGGCAGCTCAAGGGTCTCTACTGTAGTGA
ATAAAATGTGAAAACACCTGGCTGTTTTCTCACCAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15799219|emb|CAC88187.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15799219|emb|CAC88187.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               476-625, + strand, RNAz p=0.934594

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               476-625, + strand, RNAz p=0.934594

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_014260, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_014260, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               196-694, gnl|bosTau2|chr16 (23054068-23054564)
               

               
               196-694, gnl|Hg17|chr6 (33365599-33366703)
               

               
               196-694, gnl|Mm7|chr2 (68761553-68762037)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               196-694, gnl|bosTau2|chr16 (23054068-23054564)
               

               
               196-694, gnl|Hg17|chr6 (33365599-33366703)
               

               
               196-694, gnl|Mm7|chr2 (68761553-68762037)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               cki (0.495704)
               

               
               elu (0.385356)
               

               
               ecc (0.345105)
               

               
               fhi (0.339155)
               

               
               nco (0.323468)
               

               
               cga (0.279096)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               cov (0.132153)
               

               
               jca (0.11396)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.495704)
               

               
               elu (0.385356)
               

               
               ecc (0.345105)
               

               
               fhi (0.339155)
               

               
               nco (0.323468)
               

               
               cga (0.279096)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               cov (0.132153)
               

               
               jca (0.11396)

	196-694, gnl\|bosTau2\|chr16 (23054068-23054564)
	196-694, gnl\|Hg17\|chr6 (33365599-33366703)
	196-694, gnl\|Mm7\|chr2 (68761553-68762037)

	cki (0.495704)
	elu (0.385356)
	ecc (0.345105)
	fhi (0.339155)
	nco (0.323468)
	cga (0.279096)
	col (0.195008)
	nlu (0.191681)
	cli (0.152812)
	cag (0.151194)
	pty (0.142714)
	ssp (0.13552)
	cov (0.132153)
	jca (0.11396)