Non-Coding RNA Search

Ss1.1-Pig4-TMW8057P03.3

Sequence:


               
               CTCAGGAGGAGGAAGTCAGACCCAAGGGACGTCAGCGAAAGCTTTGGAAGGATGAGGGTC
GCTGGGAGCATGACAAGTTTCGGGAAGATGAGCAGGCTCCAAAGTCCCGACAGGAGCTCA
TCGCTCTTTATGGCTATGACATCCGCTCAGCTCACAATCCTGATGACATCAAACCCCGAA
GAATTCGGAAACCCAGGTTTGGGAGTCCTCCACAGAGAGATCAAGGCTGGATTGGTGAGC
GGCCAAATAAGCCCCATCGCCACCAGGGTCCTGGGGGCACCCTGCCACCAAGGACATTTA
TCAACAGGAATGCTGCAGGTACTGGCCGCATGTCTGCTCCCAGGAATTACTCTCGATCCG
GGGGCTTCAAGGAAGGTCGTGCTGGTTTTAGGCCTGTGGAAGCTGGTGGGCAGCATGCTG
GCCGGTCTGGTGAGACTGCTAAACATGAGACTAGTTACCGGTCACGGCGCCTGGAGCAGA
GTCCTGTAAGGGATCCATCTCCAGAAACAGACACTCAAGTGCTTGACAGTCCTGAGAAGG
AAGAGGCAGCCCCAGAGATACCAAATCCTGCTCCTGACACTACACCTCCGGCCCCTGACA
GGCCTATTGAAAAGAAATCCTATTCCCGGGCAAGAAGAACCAGAATCAAAGCTGGAGATG
CAGTCAAGGTTGCAGAGGAGGTCCCGCCTCCACCTGAAGGGCTGACCCCAGCACCTCCAG
TCCCAGAAACCACACCACCACCACCTGCTAAGACTGGAAACTGGGAGGCTCCAGTGGATT
CTACTACCGGTGGACTTGAACAAGACGTGGCCCAACTAAATATAACAGAACAGAATTGGG
CCCCAGGACAGCCTTCGTTCATGCAGTCACGAGAACTTCGGGGTGTACCCAACCACATGC
ACATGGGAGCAGGACCTCCGCCTCAGTTCAACCGGATGGAAGAAATGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAGGAGGAGGAAGTCAGACCCAAGGGACGTCAGCGAAAGCTTTGGAAGGATGAGGGTC
GCTGGGAGCATGACAAGTTTCGGGAAGATGAGCAGGCTCCAAAGTCCCGACAGGAGCTCA
TCGCTCTTTATGGCTATGACATCCGCTCAGCTCACAATCCTGATGACATCAAACCCCGAA
GAATTCGGAAACCCAGGTTTGGGAGTCCTCCACAGAGAGATCAAGGCTGGATTGGTGAGC
GGCCAAATAAGCCCCATCGCCACCAGGGTCCTGGGGGCACCCTGCCACCAAGGACATTTA
TCAACAGGAATGCTGCAGGTACTGGCCGCATGTCTGCTCCCAGGAATTACTCTCGATCCG
GGGGCTTCAAGGAAGGTCGTGCTGGTTTTAGGCCTGTGGAAGCTGGTGGGCAGCATGCTG
GCCGGTCTGGTGAGACTGCTAAACATGAGACTAGTTACCGGTCACGGCGCCTGGAGCAGA
GTCCTGTAAGGGATCCATCTCCAGAAACAGACACTCAAGTGCTTGACAGTCCTGAGAAGG
AAGAGGCAGCCCCAGAGATACCAAATCCTGCTCCTGACACTACACCTCCGGCCCCTGACA
GGCCTATTGAAAAGAAATCCTATTCCCGGGCAAGAAGAACCAGAATCAAAGCTGGAGATG
CAGTCAAGGTTGCAGAGGAGGTCCCGCCTCCACCTGAAGGGCTGACCCCAGCACCTCCAG
TCCCAGAAACCACACCACCACCACCTGCTAAGACTGGAAACTGGGAGGCTCCAGTGGATT
CTACTACCGGTGGACTTGAACAAGACGTGGCCCAACTAAATATAACAGAACAGAATTGGG
CCCCAGGACAGCCTTCGTTCATGCAGTCACGAGAACTTCGGGGTGTACCCAACCACATGC
ACATGGGAGCAGGACCTCCGCCTCAGTTCAACCGGATGGAAGAAATGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21961630|gb|AAH34533.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21961630|gb|AAH34533.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               194-552, - strand, RNAz p=0.83368
               

               
               633-752, - strand, RNAz p=0.87966

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               194-552, - strand, RNAz p=0.83368
               

               
               633-752, - strand, RNAz p=0.87966

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               194-884, gnl|bosTau2|chr19 (34454159-34453469)
               

               
               194-884, gnl|Hg17|chr17 (35573257-35573947)
               

               
               194-884, gnl|Mm7|chr11 (98931756-98932440)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               194-884, gnl|bosTau2|chr19 (34454159-34453469)
               

               
               194-884, gnl|Hg17|chr17 (35573257-35573947)
               

               
               194-884, gnl|Mm7|chr11 (98931756-98932440)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	194-552, - strand, RNAz p=0.83368
	633-752, - strand, RNAz p=0.87966

	194-884, gnl\|bosTau2\|chr19 (34454159-34453469)
	194-884, gnl\|Hg17\|chr17 (35573257-35573947)
	194-884, gnl\|Mm7\|chr11 (98931756-98932440)