Non-Coding RNA Search

Ss1.1-Pig4-TMW8057P22.5

Sequence:


               
               GGGCTTGTCCTGAGCCCAAGGCCCCGCCCCCCCACCCACCCAGGCCAGAGAGGGGCGGCG
CCAGTGGGCTGCCCTGGGGTCTGAGGCTGAGGCCAGCCCTGCCCAGTGAGGCTGGCAGGT
GGCTCCGGGTCGTTGGGGGAGGAGCGGGGCGGAGCGCCGCCTTGCCAGGGTTCCGGGGTC
AGGTGCTGTTGCCCTGCTCCTGCTCGAAGAGCAGCATGGCCAGCTGGGTGCGGGAGCCGA
GGCTCTCGAGCGCGCTCTGGCGGCAGCGATGGTACAGGTCCTCGCTGAGCCGCGCGCTGC
ACGTCTGGGCCCGATAGCGCTGCAGCAGCGCCGGCTCCACCGCCCGCAGGACGTGCAGGC
TGGAGAAGCGCAGGAACAGCTCATACACATCCAGGCTCTCCAGCAGCTCCTCCTCCTGCT
CCGAGGCCGCCGCCAGCCGTGCTCGGGCCGCCACGTAGTCGGAATTGTAGAAGCAGGCCT
CGGTGGCCGCCTGGCGATCAAAGCGGCCTGTGTCTCGGCCCAGCTCCGGGGGTCCGGGGC
CCTGGGGTGGGGCCACGGCCGGGTGGAAGGCCTGGAAGTGCATGGGAAAGAAGGCCTGCC
AGCCAGAGATGGCGTGCATGCGGCAGCGGTTCAGGAAGTCGGGCGTGAGCACAGTGTCTG
GCCCCGCCAGCAGGAACAGCGTGTCCAGCGGGTGCTTCTTGGAGAGCAGATCCATGAGGC
GCAGTGGTGAAGGTGCGGCCGTCTGCACGCTGAGCCAGGGCACCCGGGCACCGGGGAAAC
GCCGCTCCAGCTCTGCCACGTGGGCCTTGACAGGGGCAAAGACATCTGCATGGGCCGCCC
GCTGGGCCTGTCGTGGCTCATATAGTAGCAGCAGAGTCAGGGCTGCCGCAGCATCTCCAG
GCTCCAGTGCAGCTGTGGCGAAGGCCTCCAGGAAGCCAGGGGCCAGGTCACGCTCGGCCG
CAGCCAGTGGCAGCAACACAGTGAGACGTGAGGCCTCGGTGACATAGGGCACGGGCAAGA
TCTCCACGCGACTCAGTGGCCGTAGCAGCTGCACCCGGCGGGTGAGGGGCCGGCGGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCTTGTCCTGAGCCCAAGGCCCCGCCCCCCCACCCACCCAGGCCAGAGAGGGGCGGCG
CCAGTGGGCTGCCCTGGGGTCTGAGGCTGAGGCCAGCCCTGCCCAGTGAGGCTGGCAGGT
GGCTCCGGGTCGTTGGGGGAGGAGCGGGGCGGAGCGCCGCCTTGCCAGGGTTCCGGGGTC
AGGTGCTGTTGCCCTGCTCCTGCTCGAAGAGCAGCATGGCCAGCTGGGTGCGGGAGCCGA
GGCTCTCGAGCGCGCTCTGGCGGCAGCGATGGTACAGGTCCTCGCTGAGCCGCGCGCTGC
ACGTCTGGGCCCGATAGCGCTGCAGCAGCGCCGGCTCCACCGCCCGCAGGACGTGCAGGC
TGGAGAAGCGCAGGAACAGCTCATACACATCCAGGCTCTCCAGCAGCTCCTCCTCCTGCT
CCGAGGCCGCCGCCAGCCGTGCTCGGGCCGCCACGTAGTCGGAATTGTAGAAGCAGGCCT
CGGTGGCCGCCTGGCGATCAAAGCGGCCTGTGTCTCGGCCCAGCTCCGGGGGTCCGGGGC
CCTGGGGTGGGGCCACGGCCGGGTGGAAGGCCTGGAAGTGCATGGGAAAGAAGGCCTGCC
AGCCAGAGATGGCGTGCATGCGGCAGCGGTTCAGGAAGTCGGGCGTGAGCACAGTGTCTG
GCCCCGCCAGCAGGAACAGCGTGTCCAGCGGGTGCTTCTTGGAGAGCAGATCCATGAGGC
GCAGTGGTGAAGGTGCGGCCGTCTGCACGCTGAGCCAGGGCACCCGGGCACCGGGGAAAC
GCCGCTCCAGCTCTGCCACGTGGGCCTTGACAGGGGCAAAGACATCTGCATGGGCCGCCC
GCTGGGCCTGTCGTGGCTCATATAGTAGCAGCAGAGTCAGGGCTGCCGCAGCATCTCCAG
GCTCCAGTGCAGCTGTGGCGAAGGCCTCCAGGAAGCCAGGGGCCAGGTCACGCTCGGCCG
CAGCCAGTGGCAGCAACACAGTGAGACGTGAGGCCTCGGTGACATAGGGCACGGGCAAGA
TCTCCACGCGACTCAGTGGCCGTAGCAGCTGCACCCGGCGGGTGAGGGGCCGGCGGCCGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|39644837|gb|AAH08878.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|39644837|gb|AAH08878.2|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               100-247, - strand, RNAz p=0.995811
               

               
               488-647, - strand, RNAz p=0.685864

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               100-247, - strand, RNAz p=0.995811
               

               
               488-647, - strand, RNAz p=0.685864

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_024536, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_024536, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               72-1078, gnl|bosTau2|chr2 (68781973-68780955)
               

               
               72-1078, gnl|Hg17|chr2 (220229493-220230509)
               

               
               72-1078, gnl|Mm7|chr1 (75701062-75702060)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               72-1078, gnl|bosTau2|chr2 (68781973-68780955)
               

               
               72-1078, gnl|Hg17|chr2 (220229493-220230509)
               

               
               72-1078, gnl|Mm7|chr1 (75701062-75702060)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cov (0.396458)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.396458)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

	100-247, - strand, RNAz p=0.995811
	488-647, - strand, RNAz p=0.685864

	72-1078, gnl\|bosTau2\|chr2 (68781973-68780955)
	72-1078, gnl\|Hg17\|chr2 (220229493-220230509)
	72-1078, gnl\|Mm7\|chr1 (75701062-75702060)

	cov (0.396458)
	hyp (0.142837)
	pla (0.133672)
	ebs (0.118301)
	jca (0.11396)