Ss1.1-Pig4-TMW8058A08.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCTATGTCGCTCAGGCCCCCGACAAGCCCCGCTATACCCTGCACTACAAGACGGACGCG CCTCTCAACATCCGCAGCATCTTCTACGTGCCAGAAATGAAGCCATCCGTGTTCGACGTG AGTCGGGAGCTGGGCCCCAGCGTCTCGCTGTACAGCCGCAAGGTCCTCATCCAGACCAAG GCCACCAACATCCTGCCCACGTGGCTGCGCTTTGTTCGAGGTGTGGTGGACAGCGAGGAC ATCCCCCTGAACCTCAGCCGGGAGCTCCTGCAGGAGAGCGCGCTCATCCGGAAACTCCAG GGTGTTCTACAGCAGAGGCTGATAAAATTTTTCAGTGACCAGAGTAAAAAAGACGTGGAG AAATACGCCAGGTTTTTTGAAGATTACGGCTTGTTCATGAGGGAGGGCATCGTGACCACC ACTGAGCAGGAGGTCAAGGAGGACATCGCGAAGCTGCTGCGCTACGAATCGTCAGCACTG CCTGCTGGGCAGCTGACCAGTCTCCCGGACTACGCCAGCCGCATGCAGGCTGGCACCCGC AGCATCTACTACCTGTGTGCCCCCAACCGGCACCTGGCAGAGCACTCGCCCTACTATGAG GCCATGAAGCAGAAAAACACGGAGGTTCTTTTCTGCTACGAGCAGTTTGATGAGCTGACC TTGCTCCACCTGCGCGAGTTTGACAGGAAGAAACTGATCTCCGTGGAAACGGACATCGTC ATTGACCACTACAAGGAGGAGAAGTTTGAGGACAGCTCCCCAGCTGGCGACCGCCTATCA GAGGAGGAGATGGAGGACCTGATGGCCTGGATGAGAAACGCACTGGGGTCCCGTGTCACC AATGTGAAGGTGACTCTTCGACTGGACACCCACCCTGCCATGATCACCGTGCTGGAGATG GGGGCCGCCCGGCACTTCCTGCGCATGCAGCAGCTCGCCAAGACCCAGGAGGAGCGCGCC CAGTTGCTGCAGCCCACGCTGGAGATCAACCCCAGGCACACGCTGATCAAGAAGCTCAGT CAGCTGAGACACAGCGAGCCCGACCTGGCCCAGCTGCTGGTGGACCAGATCTACGAGAAC GCCATGATCACAGCGGGGCTCAGTGACGACCCCCGCCCCATGGTCAGCCGCCTGAACCGC CTGCTCATCAAGGCCCTGGAGCGGCAGTGAGTGCGAGGGGCCAGATGGAACCGTGGGACA AGGCAGCCTGGGACCAGCCAGGGGAGGGGGGCCCACCAACAACTGAATGCCATGGATGAG GACACCCCCTTTGGAGCTTTATTTAAATTAAAAGTTGTTTCTTAGTGTTAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCTATGTCGCTCAGGCCCCCGACAAGCCCCGCTATACCCTGCACTACAAGACGGACGCG CCTCTCAACATCCGCAGCATCTTCTACGTGCCAGAAATGAAGCCATCCGTGTTCGACGTG AGTCGGGAGCTGGGCCCCAGCGTCTCGCTGTACAGCCGCAAGGTCCTCATCCAGACCAAG GCCACCAACATCCTGCCCACGTGGCTGCGCTTTGTTCGAGGTGTGGTGGACAGCGAGGAC ATCCCCCTGAACCTCAGCCGGGAGCTCCTGCAGGAGAGCGCGCTCATCCGGAAACTCCAG GGTGTTCTACAGCAGAGGCTGATAAAATTTTTCAGTGACCAGAGTAAAAAAGACGTGGAG AAATACGCCAGGTTTTTTGAAGATTACGGCTTGTTCATGAGGGAGGGCATCGTGACCACC ACTGAGCAGGAGGTCAAGGAGGACATCGCGAAGCTGCTGCGCTACGAATCGTCAGCACTG CCTGCTGGGCAGCTGACCAGTCTCCCGGACTACGCCAGCCGCATGCAGGCTGGCACCCGC AGCATCTACTACCTGTGTGCCCCCAACCGGCACCTGGCAGAGCACTCGCCCTACTATGAG GCCATGAAGCAGAAAAACACGGAGGTTCTTTTCTGCTACGAGCAGTTTGATGAGCTGACC TTGCTCCACCTGCGCGAGTTTGACAGGAAGAAACTGATCTCCGTGGAAACGGACATCGTC ATTGACCACTACAAGGAGGAGAAGTTTGAGGACAGCTCCCCAGCTGGCGACCGCCTATCA GAGGAGGAGATGGAGGACCTGATGGCCTGGATGAGAAACGCACTGGGGTCCCGTGTCACC AATGTGAAGGTGACTCTTCGACTGGACACCCACCCTGCCATGATCACCGTGCTGGAGATG GGGGCCGCCCGGCACTTCCTGCGCATGCAGCAGCTCGCCAAGACCCAGGAGGAGCGCGCC CAGTTGCTGCAGCCCACGCTGGAGATCAACCCCAGGCACACGCTGATCAAGAAGCTCAGT CAGCTGAGACACAGCGAGCCCGACCTGGCCCAGCTGCTGGTGGACCAGATCTACGAGAAC GCCATGATCACAGCGGGGCTCAGTGACGACCCCCGCCCCATGGTCAGCCGCCTGAACCGC CTGCTCATCAAGGCCCTGGAGCGGCAGTGAGTGCGAGGGGCCAGATGGAACCGTGGGACA AGGCAGCCTGGGACCAGCCAGGGGAGGGGGGCCCACCAACAACTGAATGCCATGGATGAG GACACCCCCTTTGGAGCTTTATTTAAATTAAAAGTTGTTTCTTAGTGTTAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 445-564, - strand, RNAz p=0.994871 | |
| 473-592, - strand, RNAz p=0.73833 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 445-564, - strand, RNAz p=0.994871 | |
| 473-592, - strand, RNAz p=0.73833 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 99-222, gnl|bosTau2|chr25 (593414-593291) | |
| 99-222, gnl|Hg17|chr16 (3662823-3662700) | |
| 99-222, gnl|Mm7|chr16 (3725167-3725044) | |
| 405-626, gnl|bosTau2|chr25 (588785-588564) | |
| 405-626, gnl|canFam2|chr6 (40632751-40632595) | |
| 405-626, gnl|danRer3|chrNA (36711601-36711453) | |
| 405-626, gnl|dasNov1|scaffold_155867 (2462-2305) | |
| 405-626, gnl|echTel1|scaffold_324549 (48367-48519) | |
| 405-626, gnl|fr1|chrUn (56324752-56324894) | |
| 405-626, gnl|galGal2|chr14 (14324524-14324687) | |
| 405-626, gnl|hg17|chr16 (3654260-3654416) | |
| 405-626, gnl|mm7|chr16 (3717429-3717585) | |
| 405-626, gnl|monDom2|scaffold_49 (5328951-5328802) | |
| 405-626, gnl|oryCun1|scaffold_109789 (1059-912) | |
| 405-626, gnl|panTro1|chr18 (3518106-3518262) | |
| 405-626, gnl|rheMac2|chr20 (3789623-3789779) | |
| 405-626, gnl|rn3|chr10 (11757114-11756958) | |
| 405-626, gnl|tetNig1|chr3 (9708407-9708551) | |
| 405-626, gnl|xenTro1|scaffold_12 (2740276-2740125) | |
| 845-996, gnl|bosTau2|chr25 (586216-586065) | |
| 845-996, gnl|canFam2|chr6 (40634591-40634428) | |
| 845-996, gnl|danRer3|chrNA (36717188-36717036) | |
| 845-996, gnl|dasNov1|scaffold_155867 (4451-4282) | |
| 845-996, gnl|echTel1|scaffold_111403 (573-738) | |
| 845-996, gnl|fr1|chrUn (56324134-56324293) | |
| 845-996, gnl|galGal2|chr14 (14322714-14322877) | |
| 845-996, gnl|hg17|chr16 (3651981-3652147) | |
| 845-996, gnl|Hg17|chr16 (3652139-3651988) | |
| 845-996, gnl|mm7|chr16 (3715510-3715676) | |
| 845-996, gnl|Mm7|chr16 (3715668-3715517) | |
| 845-996, gnl|monDom2|scaffold_49 (5333650-5333484) | |
| 845-996, gnl|oryCun1|scaffold_109789 (2807-2641) | |
| 845-996, gnl|panTro1|chr18 (3515801-3515967) | |
| 845-996, gnl|rheMac2|chr20 (3787324-3787490) | |
| 845-996, gnl|rn3|chr10 (11758905-11758739) | |
| 845-996, gnl|tetNig1|chr3 (9707797-9707958) | |
| 845-996, gnl|xenTro1|scaffold_12 (2741876-2741719) | |
| 1066-1310, gnl|bosTau2|chr25 (583151-582894) | |
| 1066-1310, gnl|Mm7|chr16 (3711792-3711533) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 99-222, gnl|bosTau2|chr25 (593414-593291) | |
| 99-222, gnl|Hg17|chr16 (3662823-3662700) | |
| 99-222, gnl|Mm7|chr16 (3725167-3725044) | |
| 405-626, gnl|bosTau2|chr25 (588785-588564) | |
| 405-626, gnl|canFam2|chr6 (40632751-40632595) | |
| 405-626, gnl|danRer3|chrNA (36711601-36711453) | |
| 405-626, gnl|dasNov1|scaffold_155867 (2462-2305) | |
| 405-626, gnl|echTel1|scaffold_324549 (48367-48519) | |
| 405-626, gnl|fr1|chrUn (56324752-56324894) | |
| 405-626, gnl|galGal2|chr14 (14324524-14324687) | |
| 405-626, gnl|hg17|chr16 (3654260-3654416) | |
| 405-626, gnl|mm7|chr16 (3717429-3717585) | |
| 405-626, gnl|monDom2|scaffold_49 (5328951-5328802) | |
| 405-626, gnl|oryCun1|scaffold_109789 (1059-912) | |
| 405-626, gnl|panTro1|chr18 (3518106-3518262) | |
| 405-626, gnl|rheMac2|chr20 (3789623-3789779) | |
| 405-626, gnl|rn3|chr10 (11757114-11756958) | |
| 405-626, gnl|tetNig1|chr3 (9708407-9708551) | |
| 405-626, gnl|xenTro1|scaffold_12 (2740276-2740125) | |
| 845-996, gnl|bosTau2|chr25 (586216-586065) | |
| 845-996, gnl|canFam2|chr6 (40634591-40634428) | |
| 845-996, gnl|danRer3|chrNA (36717188-36717036) | |
| 845-996, gnl|dasNov1|scaffold_155867 (4451-4282) | |
| 845-996, gnl|echTel1|scaffold_111403 (573-738) | |
| 845-996, gnl|fr1|chrUn (56324134-56324293) | |
| 845-996, gnl|galGal2|chr14 (14322714-14322877) | |
| 845-996, gnl|hg17|chr16 (3651981-3652147) | |
| 845-996, gnl|Hg17|chr16 (3652139-3651988) | |
| 845-996, gnl|mm7|chr16 (3715510-3715676) | |
| 845-996, gnl|Mm7|chr16 (3715668-3715517) | |
| 845-996, gnl|monDom2|scaffold_49 (5333650-5333484) | |
| 845-996, gnl|oryCun1|scaffold_109789 (2807-2641) | |
| 845-996, gnl|panTro1|chr18 (3515801-3515967) | |
| 845-996, gnl|rheMac2|chr20 (3787324-3787490) | |
| 845-996, gnl|rn3|chr10 (11758905-11758739) | |
| 845-996, gnl|tetNig1|chr3 (9707797-9707958) | |
| 845-996, gnl|xenTro1|scaffold_12 (2741876-2741719) | |
| 1066-1310, gnl|bosTau2|chr25 (583151-582894) | |
| 1066-1310, gnl|Mm7|chr16 (3711792-3711533) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| col (0.390016) | |
| fbs (0.350693) | |
| pty (0.285429) | |
| fce (0.271592) | |
| cov (0.264306) | |
| jca (0.22792) | |
| mas (0.210305) | |
| fhi (0.169578) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.390016) | |
| fbs (0.350693) | |
| pty (0.285429) | |
| fce (0.271592) | |
| cov (0.264306) | |
| jca (0.22792) | |
| mas (0.210305) | |
| fhi (0.169578) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| eje (0.0988338) |