Non-Coding RNA Search

Ss1.1-Pig4-TMW8058A10.5

Sequence:


               
               CTTTATTAAGTGATGCCCACCCATTACTTTCCCCAAAGATTGTGCTCTTCTCACAGTGTC
TAGGAGCCTGCTTCTCATTCCGCCTCCCTCCCCAGCGTGGACAGACCCTGGCTCTTCAGA
TGATGCAGCCCGCCACGTGGATCCCTGGGCCGCTTCTTCCCATTCATTCATTCACTCACT
CATTCATTCGGTGTTAGGACGAAGCGAGTGGCGGGGACGCGAGACCAGAAGGAATGAGGG
GAGGTGGGGGGGGGCCGGGGGGTAGCGAGTCCCCCCTTCTCGTCCACTGCAGGCCGTGAA
CCCCGGCAGGTCTCTGTTCCTGCTCTACACCCTCAAGAGCTCCCCCAGGCTCGGCCTGCT
GTACCTCTACCTGTTCGACTACACGGACACCTTCCTGCCCTTCATCCACACCATCTGCCC
TCTGCAGGAAGGCGGCTCCAGCGAGGACATCATCACCAGGCTGCTGGTGGGTCTGCAGAG
GGCCCTGGGCCGGGTCTCGCTGCTGTCCCTCGGCTCAGGGGGGAGTTGGAGACGCAGCCG
GAGCCTGGTCTGCAGAGTCGTCGGTGGAGCCCATTGACTGGGGGTGGTTCTGTGTGTCTA
GTTGGTCATTAGGGGGCAAGGTCCTCTGCGTTGGTACTTTTGGGGCAAGCCTTCTGGTCC
TTTTCTGTGTGTTACTCGGAAAGGATCTGAGGGAGCCCACATGGAAGCAGTGGAGAGAAT
TGCTGGTGAAATACTCCTTCCTTCCGTACCAGCTGATTGCCGAATTTGCCTGGGACTGGC
TGGAGGTCCATTACTGGACGTCACGGTTTCTCATCGTCAATGCCATGTTACTCTCAGTTC
TGGAATTATTCTCCTTTTGGAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTATTAAGTGATGCCCACCCATTACTTTCCCCAAAGATTGTGCTCTTCTCACAGTGTC
TAGGAGCCTGCTTCTCATTCCGCCTCCCTCCCCAGCGTGGACAGACCCTGGCTCTTCAGA
TGATGCAGCCCGCCACGTGGATCCCTGGGCCGCTTCTTCCCATTCATTCATTCACTCACT
CATTCATTCGGTGTTAGGACGAAGCGAGTGGCGGGGACGCGAGACCAGAAGGAATGAGGG
GAGGTGGGGGGGGGCCGGGGGGTAGCGAGTCCCCCCTTCTCGTCCACTGCAGGCCGTGAA
CCCCGGCAGGTCTCTGTTCCTGCTCTACACCCTCAAGAGCTCCCCCAGGCTCGGCCTGCT
GTACCTCTACCTGTTCGACTACACGGACACCTTCCTGCCCTTCATCCACACCATCTGCCC
TCTGCAGGAAGGCGGCTCCAGCGAGGACATCATCACCAGGCTGCTGGTGGGTCTGCAGAG
GGCCCTGGGCCGGGTCTCGCTGCTGTCCCTCGGCTCAGGGGGGAGTTGGAGACGCAGCCG
GAGCCTGGTCTGCAGAGTCGTCGGTGGAGCCCATTGACTGGGGGTGGTTCTGTGTGTCTA
GTTGGTCATTAGGGGGCAAGGTCCTCTGCGTTGGTACTTTTGGGGCAAGCCTTCTGGTCC
TTTTCTGTGTGTTACTCGGAAAGGATCTGAGGGAGCCCACATGGAAGCAGTGGAGAGAAT
TGCTGGTGAAATACTCCTTCCTTCCGTACCAGCTGATTGCCGAATTTGCCTGGGACTGGC
TGGAGGTCCATTACTGGACGTCACGGTTTCTCATCGTCAATGCCATGTTACTCTCAGTTC
TGGAATTATTCTCCTTTTGGAGGA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               18-546, gnl|bosTau2|chr25 (14567329-14566813)
               


               
               666-864, gnl|bosTau2|chr25 (14565221-14565023)
               

               
               666-864, gnl|Hg17|chr16 (14666212-14666407)
               

               
               666-864, gnl|Mm7|chr16 (13245447-13245645)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-546, gnl|bosTau2|chr25 (14567329-14566813)
               


               
               666-864, gnl|bosTau2|chr25 (14565221-14565023)
               

               
               666-864, gnl|Hg17|chr16 (14666212-14666407)
               

               
               666-864, gnl|Mm7|chr16 (13245447-13245645)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               fhi (0.169578)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	18-546, gnl\|bosTau2\|chr25 (14567329-14566813)

	666-864, gnl\|bosTau2\|chr25 (14565221-14565023)
	666-864, gnl\|Hg17\|chr16 (14666212-14666407)
	666-864, gnl\|Mm7\|chr16 (13245447-13245645)