Ss1.1-Pig4-TMW8058A20.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTTTTTTTTTTATAAACATTTGGAATTTTATTTAAAAAAAAAAAAAA AAAAAAAACCATCACAACCATGAACATTGTTACAGTTAAGAGGCCCTCTTGGTTCTTCAC AAAGACACTGAGCATGCTCACAAGGGATTCCCATTGTTTAGTCTTAGTTAAACAACCATC TTTAAAAGAAAACAAAACAAAAAATTTTTTTTTTTTTACCATTTAACTTGTTTTAATGTT TCTTCACAAATGGTGAAAAATACTAAAGTACAGACAAGGAATAATCATAATGTTGTGGCC AACATTATAAATATGGAATTATAAATTTAAAACATTTTCTGGTTTAAAAAATAAATCTGG TAGTCAATGCAGCTCTGCGGGGTCTCTGCGTCTAATAGGGCCGGTCTCTGCGTTCCTGAC GATGCTCGCCTTTATCCATTTTTCCAGGTCCTCCACGGCCACCTCTTCTTCCTCCCATCT GTTCCATCAAAGGTCCAGGGGGCCCTCCAGGGCCACCTCGCCTTCCTCCGCCAAAGCCAC CGCGGTCCATGCCCCGGCCACCACGGAAGCCACCTCTGTCTCCACCACGGCCACCTCTGA ACATTCCACCAGGACCACCACGGTCCATGAGGCCACCTCTTCCTCCTCGCATGCCACCAG GGCCACCTCTGCCACGGTCACCACCTGGCGGTGGGAAAGGAGGTGGGAGGAAGCCTTCGG GCTTTGGGGCCTTACACTGGTTGCACTCTGTCCTCCAGGCGAAGTTCTGGTTTCCACACC CCGGGTTGGGACATTGCCAGTCTCCAGCTCGGTGCTGGACGTTTCCTCCTCCAGATGGAT TCCCTCGGGAACCGCGGGGCCCTCTTGGCGGGAAGCCCCCTCTGTCTCCTCCACGGCCTC CCATGCGACCCATGGGTCCCCCAGGACCTCCTGGACCCCCTGGACCTCCACGGAGCGGTG GCGGCATCCCTCTGCCCTCTCGGGGTGGCATTCCACCCCGCATGCTATTCATTGGAGGCT TCTTCCGAGCAAGAGAAACTTTAAGTTTGCTCCCTTGAAAATCTTTTCCATCAAACCACT CCACGGCAGCCTTGGCAGTTGGTGGGTCTTCGTAAGACACTGTAGCATCGCCTTTGGGCT TCCCTGTCTCCTTGTCCAAGTAGATATGGATCATGGGTTGTCCAGTCCTCTTGTTCATCT TCACAACTCCACACTGCTTAAAGAAGTCCGCCAGATCATCTAGAGTCACATTGTCATTTA ATCCTTGCACATAAATTGCACTGTTGTCAGAGTCTTCATCTGGATCTACAGGCGGGCCTA AATCAAGATCTGGTCCTTCATCCATGGGTCCACCAGGCTTATTGAAGCCACCTCGCTCTC CAGCGCTGCCCATTCCACCGCGTCCTCCTCCCCGCCCACCTCTGCTCATGCCTCCACGAT CAAATCCCCCTCTTCCCCTGCCCCGGTTATCAGGGCCACTCATGCTCCGGTTCTCTCCTG GTCCGGAAAATCCTCCAGACTCCTGCCCATAAACACCCATGCTACTGGGGTGGTCCTGTC GGAATGAACTCTGCTGCCCGTAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTTTTTTTTTTATAAACATTTGGAATTTTATTTAAAAAAAAAAAAAA AAAAAAAACCATCACAACCATGAACATTGTTACAGTTAAGAGGCCCTCTTGGTTCTTCAC AAAGACACTGAGCATGCTCACAAGGGATTCCCATTGTTTAGTCTTAGTTAAACAACCATC TTTAAAAGAAAACAAAACAAAAAATTTTTTTTTTTTTACCATTTAACTTGTTTTAATGTT TCTTCACAAATGGTGAAAAATACTAAAGTACAGACAAGGAATAATCATAATGTTGTGGCC AACATTATAAATATGGAATTATAAATTTAAAACATTTTCTGGTTTAAAAAATAAATCTGG TAGTCAATGCAGCTCTGCGGGGTCTCTGCGTCTAATAGGGCCGGTCTCTGCGTTCCTGAC GATGCTCGCCTTTATCCATTTTTCCAGGTCCTCCACGGCCACCTCTTCTTCCTCCCATCT GTTCCATCAAAGGTCCAGGGGGCCCTCCAGGGCCACCTCGCCTTCCTCCGCCAAAGCCAC CGCGGTCCATGCCCCGGCCACCACGGAAGCCACCTCTGTCTCCACCACGGCCACCTCTGA ACATTCCACCAGGACCACCACGGTCCATGAGGCCACCTCTTCCTCCTCGCATGCCACCAG GGCCACCTCTGCCACGGTCACCACCTGGCGGTGGGAAAGGAGGTGGGAGGAAGCCTTCGG GCTTTGGGGCCTTACACTGGTTGCACTCTGTCCTCCAGGCGAAGTTCTGGTTTCCACACC CCGGGTTGGGACATTGCCAGTCTCCAGCTCGGTGCTGGACGTTTCCTCCTCCAGATGGAT TCCCTCGGGAACCGCGGGGCCCTCTTGGCGGGAAGCCCCCTCTGTCTCCTCCACGGCCTC CCATGCGACCCATGGGTCCCCCAGGACCTCCTGGACCCCCTGGACCTCCACGGAGCGGTG GCGGCATCCCTCTGCCCTCTCGGGGTGGCATTCCACCCCGCATGCTATTCATTGGAGGCT TCTTCCGAGCAAGAGAAACTTTAAGTTTGCTCCCTTGAAAATCTTTTCCATCAAACCACT CCACGGCAGCCTTGGCAGTTGGTGGGTCTTCGTAAGACACTGTAGCATCGCCTTTGGGCT TCCCTGTCTCCTTGTCCAAGTAGATATGGATCATGGGTTGTCCAGTCCTCTTGTTCATCT TCACAACTCCACACTGCTTAAAGAAGTCCGCCAGATCATCTAGAGTCACATTGTCATTTA ATCCTTGCACATAAATTGCACTGTTGTCAGAGTCTTCATCTGGATCTACAGGCGGGCCTA AATCAAGATCTGGTCCTTCATCCATGGGTCCACCAGGCTTATTGAAGCCACCTCGCTCTC CAGCGCTGCCCATTCCACCGCGTCCTCCTCCCCGCCCACCTCTGCTCATGCCTCCACGAT CAAATCCCCCTCTTCCCCTGCCCCGGTTATCAGGGCCACTCATGCTCCGGTTCTCTCCTG GTCCGGAAAATCCTCCAGACTCCTGCCCATAAACACCCATGCTACTGGGGTGGTCCTGTC GGAATGAACTCTGCTGCCCGTAGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 432-669, - strand, RNAz p=0.826219 | |
| 782-950, - strand, RNAz p=0.988031 | |
| 860-950, - strand, RNAz p=0.99939 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 432-669, - strand, RNAz p=0.826219 | |
| 782-950, - strand, RNAz p=0.988031 | |
| 860-950, - strand, RNAz p=0.99939 |
| Aligned organism(s): 62 entry(ies) | More info |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
| 22-431, gnl|bosTau2|chr17 (39335168-39334783) | |
| 22-431, gnl|Hg17|chr22 (28021063-28020666) | |
| 22-431, gnl|Mm7|chr11 (5021696-5022106) | |
| 432-708, gnl|bosTau2|chr17 (39334533-39334257) | |
| 432-708, gnl|Hg17|chr22 (28020395-28020117) | |
| 432-708, gnl|Mm7|chr11 (5022231-5022504) | |
| 782-950, gnl|bosTau2|chr17 (39333371-39333203) | |
| 782-950, gnl|canFam2|chr36 (17465798-17465653) | |
| 782-950, gnl|danRer3|chrUn (9065284-9065443) | |
| 782-950, gnl|dasNov1|scaffold_64302 (1455-1311) | |
| 782-950, gnl|echTel1|scaffold_266202 (2232-2086) | |
| 782-950, gnl|fr1|chrUn (2085037-2084880) | |
| 782-950, gnl|hg17|chr1 (162976913-162977058) | |
| 782-950, gnl|Hg17|chr22 (28019440-28019272) | |
| 782-950, gnl|loxAfr1|scaffold_1384 (176533-176647) | |
| 782-950, gnl|mm7|chr10 (52156757-52156902) | |
| 782-950, gnl|Mm7|chr11 (5022998-5023166) | |
| 782-950, gnl|monDom2|scaffold_1 (81216911-81216766) | |
| 782-950, gnl|oryCun1|scaffold_170407 (43575-43712) | |
| 782-950, gnl|panTro1|chr1 (145217437-145217582) | |
| 782-950, gnl|rheMac2|chr10 (73126161-73126016) | |
| 782-950, gnl|rn3|chr4 (24172688-24172543) | |
| 782-950, gnl|tetNig1|chr12 (6653508-6653381) | |
| 782-950, gnl|xenTro1|scaffold_207 (369040-368906) | |
| 1068-1200, gnl|bosTau2|chr17 (39331666-39331534) | |
| 1068-1200, gnl|canFam2|chr26 (25634529-25634675) | |
| 1068-1200, gnl|canFam2|chr36 (17465513-17465382) | |
| 1068-1200, gnl|danRer3|chrUn (9065838-9065692) | |
| 1068-1200, gnl|danRer3|chrUn (9065696-9065827) | |
| 1068-1200, gnl|dasNov1|scaffold_64302 (1189-1063) | |
| 1068-1200, gnl|dasNov1|scaffold_8146 (43515-43661) | |
| 1068-1200, gnl|echTel1|scaffold_266202 (1946-1824) | |
| 1068-1200, gnl|echTel1|scaffold_295808 (82612-82466) | |
| 1068-1200, gnl|fr1|chrUn (2084373-2084517) | |
| 1068-1200, gnl|fr1|chrUn (2084513-2084385) | |
| 1068-1200, gnl|galGal2|chr15 (11014784-11014647) | |
| 1068-1200, gnl|galGal2|chr15 (11014651-11014781) | |
| 1068-1200, gnl|hg17|chr1 (162977198-162977329) | |
| 1068-1200, gnl|hg17|chr22 (28016773-28016919) | |
| 1068-1200, gnl|Hg17|chr22 (28016913-28016781) | |
| 1068-1200, gnl|loxAfr1|scaffold_1384 (176780-176911) | |
| 1068-1200, gnl|loxAfr1|scaffold_42274 (2032-1885) | |
| 1068-1200, gnl|mm7|chr10 (52157042-52157173) | |
| 1068-1200, gnl|mm7|chr11 (5024956-5024810) | |
| 1068-1200, gnl|Mm7|chr11 (5024814-5024946) | |
| 1068-1200, gnl|monDom2|scaffold_1 (81216653-81216522) | |
| 1068-1200, gnl|monDom2|scaffold_89 (3092642-3092788) | |
| 1068-1200, gnl|oryCun1|scaffold_170407 (43975-43845) | |
| 1068-1200, gnl|oryCun1|scaffold_170407 (43842-43973) | |
| 1068-1200, gnl|panTro1|chr1 (145217722-145217853) | |
| 1068-1200, gnl|panTro1|chr23_random (8634587-8634733) | |
| 1068-1200, gnl|rheMac2|chr10 (73122913-73123059) | |
| 1068-1200, gnl|rheMac2|chr10 (73123054-73122924) | |
| 1068-1200, gnl|rn3|chr14 (85752665-85752519) | |
| 1068-1200, gnl|rn3|chr4 (24172403-24172272) | |
| 1068-1200, gnl|tetNig1|chr12 (6652977-6653111) | |
| 1068-1200, gnl|tetNig1|chr12 (6653111-6652983) | |
| 1068-1200, gnl|xenTro1|scaffold_207 (366558-366707) | |
| 1068-1200, gnl|xenTro1|scaffold_207 (366704-366574) | |
| 1389-1569, gnl|bosTau2|chr17 (39324867-39324687) | |
| 1389-1569, gnl|Hg17|chr22 (28009329-28009149) | |
| 1389-1569, gnl|Mm7|chr11 (5034256-5034436) |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 22-431, gnl|bosTau2|chr17 (39335168-39334783) | |
| 22-431, gnl|Hg17|chr22 (28021063-28020666) | |
| 22-431, gnl|Mm7|chr11 (5021696-5022106) | |
| 432-708, gnl|bosTau2|chr17 (39334533-39334257) | |
| 432-708, gnl|Hg17|chr22 (28020395-28020117) | |
| 432-708, gnl|Mm7|chr11 (5022231-5022504) | |
| 782-950, gnl|bosTau2|chr17 (39333371-39333203) | |
| 782-950, gnl|canFam2|chr36 (17465798-17465653) | |
| 782-950, gnl|danRer3|chrUn (9065284-9065443) | |
| 782-950, gnl|dasNov1|scaffold_64302 (1455-1311) | |
| 782-950, gnl|echTel1|scaffold_266202 (2232-2086) | |
| 782-950, gnl|fr1|chrUn (2085037-2084880) | |
| 782-950, gnl|hg17|chr1 (162976913-162977058) | |
| 782-950, gnl|Hg17|chr22 (28019440-28019272) | |
| 782-950, gnl|loxAfr1|scaffold_1384 (176533-176647) | |
| 782-950, gnl|mm7|chr10 (52156757-52156902) | |
| 782-950, gnl|Mm7|chr11 (5022998-5023166) | |
| 782-950, gnl|monDom2|scaffold_1 (81216911-81216766) | |
| 782-950, gnl|oryCun1|scaffold_170407 (43575-43712) | |
| 782-950, gnl|panTro1|chr1 (145217437-145217582) | |
| 782-950, gnl|rheMac2|chr10 (73126161-73126016) | |
| 782-950, gnl|rn3|chr4 (24172688-24172543) | |
| 782-950, gnl|tetNig1|chr12 (6653508-6653381) | |
| 782-950, gnl|xenTro1|scaffold_207 (369040-368906) | |
| 1068-1200, gnl|bosTau2|chr17 (39331666-39331534) | |
| 1068-1200, gnl|canFam2|chr26 (25634529-25634675) | |
| 1068-1200, gnl|canFam2|chr36 (17465513-17465382) | |
| 1068-1200, gnl|danRer3|chrUn (9065838-9065692) | |
| 1068-1200, gnl|danRer3|chrUn (9065696-9065827) | |
| 1068-1200, gnl|dasNov1|scaffold_64302 (1189-1063) | |
| 1068-1200, gnl|dasNov1|scaffold_8146 (43515-43661) | |
| 1068-1200, gnl|echTel1|scaffold_266202 (1946-1824) | |
| 1068-1200, gnl|echTel1|scaffold_295808 (82612-82466) | |
| 1068-1200, gnl|fr1|chrUn (2084373-2084517) | |
| 1068-1200, gnl|fr1|chrUn (2084513-2084385) | |
| 1068-1200, gnl|galGal2|chr15 (11014784-11014647) | |
| 1068-1200, gnl|galGal2|chr15 (11014651-11014781) | |
| 1068-1200, gnl|hg17|chr1 (162977198-162977329) | |
| 1068-1200, gnl|hg17|chr22 (28016773-28016919) | |
| 1068-1200, gnl|Hg17|chr22 (28016913-28016781) | |
| 1068-1200, gnl|loxAfr1|scaffold_1384 (176780-176911) | |
| 1068-1200, gnl|loxAfr1|scaffold_42274 (2032-1885) | |
| 1068-1200, gnl|mm7|chr10 (52157042-52157173) | |
| 1068-1200, gnl|mm7|chr11 (5024956-5024810) | |
| 1068-1200, gnl|Mm7|chr11 (5024814-5024946) | |
| 1068-1200, gnl|monDom2|scaffold_1 (81216653-81216522) | |
| 1068-1200, gnl|monDom2|scaffold_89 (3092642-3092788) | |
| 1068-1200, gnl|oryCun1|scaffold_170407 (43975-43845) | |
| 1068-1200, gnl|oryCun1|scaffold_170407 (43842-43973) | |
| 1068-1200, gnl|panTro1|chr1 (145217722-145217853) | |
| 1068-1200, gnl|panTro1|chr23_random (8634587-8634733) | |
| 1068-1200, gnl|rheMac2|chr10 (73122913-73123059) | |
| 1068-1200, gnl|rheMac2|chr10 (73123054-73122924) | |
| 1068-1200, gnl|rn3|chr14 (85752665-85752519) | |
| 1068-1200, gnl|rn3|chr4 (24172403-24172272) | |
| 1068-1200, gnl|tetNig1|chr12 (6652977-6653111) | |
| 1068-1200, gnl|tetNig1|chr12 (6653111-6652983) | |
| 1068-1200, gnl|xenTro1|scaffold_207 (366558-366707) | |
| 1068-1200, gnl|xenTro1|scaffold_207 (366704-366574) | |
| 1389-1569, gnl|bosTau2|chr17 (39324867-39324687) | |
| 1389-1569, gnl|Hg17|chr22 (28009329-28009149) | |
| 1389-1569, gnl|Mm7|chr11 (5034256-5034436) |
| Expressed library(ies): 38 entry(ies) | More info |
| Expressed library(ies): 38 entry(ies) | Help | Less info |
| cmu (1.49115) | |
| cje (0.991408) | |
| cut (0.849618) | |
| sto (0.719295) | |
| cst (0.700182) | |
| cki (0.660939) | |
| fhi (0.508733) | |
| che (0.408942) | |
| col (0.390016) | |
| elu (0.385356) | |
| mcp (0.341297) | |
| eye (0.341006) | |
| nje (0.33184) | |
| sme (0.305437) | |
| cag (0.302389) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| kid (0.259471) | |
| ebs (0.236602) | |
| med (0.232504) | |
| jca (0.22792) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| eli (0.151814) | |
| lun (0.150489) | |
| ski (0.146735) | |
| spl (0.143184) | |
| pty (0.142714) | |
| ste (0.135208) | |
| ova (0.129132) | |
| bla (0.124347) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| ecc (0.115035) |
| Expressed library(ies): 38 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cmu (1.49115) | |
| cje (0.991408) | |
| cut (0.849618) | |
| sto (0.719295) | |
| cst (0.700182) | |
| cki (0.660939) | |
| fhi (0.508733) | |
| che (0.408942) | |
| col (0.390016) | |
| elu (0.385356) | |
| mcp (0.341297) | |
| eye (0.341006) | |
| nje (0.33184) | |
| sme (0.305437) | |
| cag (0.302389) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| kid (0.259471) | |
| ebs (0.236602) | |
| med (0.232504) | |
| jca (0.22792) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| eli (0.151814) | |
| lun (0.150489) | |
| ski (0.146735) | |
| spl (0.143184) | |
| pty (0.142714) | |
| ste (0.135208) | |
| ova (0.129132) | |
| bla (0.124347) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| ecc (0.115035) |