Non-Coding RNA Search

Ss1.1-Pig4-TMW8058B10.3

Sequence:


               
               AGTGTTAAGGTTAGAAACTTGACTTGCTAGCTTATGAAGCGTCAAATTGAGAAGTCACTC
TACATTAAAAAAAAAAAGCATTAAAGGCATATAGCAGAAAGTAAGAATTTTCATTGTTTT
TCAGTGCCTCAGGACTAGGATTACTTTCTGACCAGCAAAGACAGATATTTCTTCATCAAC
AGCAATTTCAGCAATTGTTAAATTCGCAACAGCTCACACCAGAGCAGCACCAGGCCCTTC
TGTATCAGCTGGTGCAGCAGCACCACCACCAGCAGCACCACCAGCCTGACCTCCAGCAGC
TGCAGATCCCGGGACCCACGCAGATACCCATCAACAACCTGCTGGCAGGCACGCAGGCGC
CCCCGCTTCACCCAGCCACCAGCAACCCATTCCTCACCATCCATGGCGATAACGCAAGTC
AGAAGGTGACAAGACTTAGTGATAAAACTGGGCCTGTTGCTCAAGAGAAAAGTTGACATT
TGAGAAACGTCTAGAAATTGCCTATCCTGCTGTTCTAGCACTTCATCTGGCTGCTGCCCT
GGCAGTCTTCAACCACAGCTATGAAGAAATGCAACAAGAAACTAGCTGCACGACAAAGGG
TGAATCGCCACAAGAACATTCTTGTGAGGCTTTGATTGATTTTCTTGTTGCTTTGTTGCA
CTGAAACGGAATTCCTTTATCCCCTACCCCTCACCTAGGTTTTTTGAACTTTGAAAGAAA
ATTTAATAACTAACTTTTGTCAATGAAATAATTTACATGCAATGAGTTTATCAACCTAAG
AGAAATTTAATATAGTTGGTGCACAACTAATTTTGTTATAAATCGGAGAGGTGAATAGCA
AAACTAAAGACTTGTTAACCATTTATAAACTATTTGATTTTATTGTACAAGTTGGAATAT
GAACTGTGATCTTTCGTTTGGGTTACAGTATGCTTGCTCTGTGAGTCAGATCTTAAAACA
AATTTCAAGGAACTGTCTAATTTCTTCTACTGGAGTTTTGTTGGTTAAATATTACAAATA
AATAGGTCATCCACTGGGACTTGGCAATCTTTGTTATAAAAATTTCCTTTCTAATGGGAT
TTGGCCAATTTTGGTAATCCAGTTAGGATGACAGATTTCTGCTTCTGTTAAAGGTAATTT
TCTTTTGCTAAAATGCCTTTTCTTTAGTGTTAAGACGTACTCATATTTTAAAGAAACCTT
GAGTTAAGTGAGTTCTGAGGCTGCTGGGGGAACCAGATCAGTTCAAAGTGAAACTGCTGG
TAGGGTTTGGCCTGAATCAAGTGCCTGTTAGTACCTGCCTTGTGCTGAAATGGCTCTGGA
CGGCTGAGCCTGTGCTAGTCAGTCCTTGTAAGTAGTAGGAGTAGTCAGTGTTGCACCCGC
AGCCTTCCCCATGGTTCTGCCTTTATTAAAAAACATTCTATGCCACTCTAGATAGCTCAG
GCAAAACTGTTTCTGGGTATTTATCCACTAATGAGTCACAAGAAAAACGAGTGGATTTGG
TAAGCATTTTCTTTTTTTTCTTAAGTTAGACAACTTCCCATTATTGACAATGATTTCAAG
CAAACAAAAGACAATAAACCCGCCACTACAGTTCCTGAAACAGGTGAAATCTGTATTACA
GCCCTTCCACGTTGGGGAGCCTCACTCCTGGTGTGACAGTACGGCAGAGTATGAATTAAA
CAATTGGGGATGTAATCATTGAACTATTCTTAAATGTGTGAATTATTAGTGGAAAAGACC
CAGCTGTAATTAGACCTCCACTGTGTACTTAGCTGGAAGAACATGTTAATTCTGCAATAT
GTCTCTTGGTTAAACATTGCACAGTTCTTACCTCATTTCTGTAAATAAGGTTTTGTGAAT
CTGTTTTGTATTGTGAAAAATTCATAAGATAACATTGATATTTTGATTTGTAATATTTCT
AATTGGTAGATTTAATTGAAAAGTAAAATTAATTTATTTTTATATGTTCAGGGGAATTTT
AAAGAAAATCAGATGTTTTGTAGATAATTAAAAAAAAATCGGTGTGGTTTATTTTACTTA
TTTAACCCGCTGGTTGTTATTCTGTAACAATTTGTATAAATGGTAAATTTTGAATGTGTT
GTTATTTTACTTAGATGTAAAATTCCACATGTATTAAAGAAAATGTACAAAGTTTTTGTT
AATAAAATTTAATAATGTTTATAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGTTAAGGTTAGAAACTTGACTTGCTAGCTTATGAAGCGTCAAATTGAGAAGTCACTC
TACATTAAAAAAAAAAAGCATTAAAGGCATATAGCAGAAAGTAAGAATTTTCATTGTTTT
TCAGTGCCTCAGGACTAGGATTACTTTCTGACCAGCAAAGACAGATATTTCTTCATCAAC
AGCAATTTCAGCAATTGTTAAATTCGCAACAGCTCACACCAGAGCAGCACCAGGCCCTTC
TGTATCAGCTGGTGCAGCAGCACCACCACCAGCAGCACCACCAGCCTGACCTCCAGCAGC
TGCAGATCCCGGGACCCACGCAGATACCCATCAACAACCTGCTGGCAGGCACGCAGGCGC
CCCCGCTTCACCCAGCCACCAGCAACCCATTCCTCACCATCCATGGCGATAACGCAAGTC
AGAAGGTGACAAGACTTAGTGATAAAACTGGGCCTGTTGCTCAAGAGAAAAGTTGACATT
TGAGAAACGTCTAGAAATTGCCTATCCTGCTGTTCTAGCACTTCATCTGGCTGCTGCCCT
GGCAGTCTTCAACCACAGCTATGAAGAAATGCAACAAGAAACTAGCTGCACGACAAAGGG
TGAATCGCCACAAGAACATTCTTGTGAGGCTTTGATTGATTTTCTTGTTGCTTTGTTGCA
CTGAAACGGAATTCCTTTATCCCCTACCCCTCACCTAGGTTTTTTGAACTTTGAAAGAAA
ATTTAATAACTAACTTTTGTCAATGAAATAATTTACATGCAATGAGTTTATCAACCTAAG
AGAAATTTAATATAGTTGGTGCACAACTAATTTTGTTATAAATCGGAGAGGTGAATAGCA
AAACTAAAGACTTGTTAACCATTTATAAACTATTTGATTTTATTGTACAAGTTGGAATAT
GAACTGTGATCTTTCGTTTGGGTTACAGTATGCTTGCTCTGTGAGTCAGATCTTAAAACA
AATTTCAAGGAACTGTCTAATTTCTTCTACTGGAGTTTTGTTGGTTAAATATTACAAATA
AATAGGTCATCCACTGGGACTTGGCAATCTTTGTTATAAAAATTTCCTTTCTAATGGGAT
TTGGCCAATTTTGGTAATCCAGTTAGGATGACAGATTTCTGCTTCTGTTAAAGGTAATTT
TCTTTTGCTAAAATGCCTTTTCTTTAGTGTTAAGACGTACTCATATTTTAAAGAAACCTT
GAGTTAAGTGAGTTCTGAGGCTGCTGGGGGAACCAGATCAGTTCAAAGTGAAACTGCTGG
TAGGGTTTGGCCTGAATCAAGTGCCTGTTAGTACCTGCCTTGTGCTGAAATGGCTCTGGA
CGGCTGAGCCTGTGCTAGTCAGTCCTTGTAAGTAGTAGGAGTAGTCAGTGTTGCACCCGC
AGCCTTCCCCATGGTTCTGCCTTTATTAAAAAACATTCTATGCCACTCTAGATAGCTCAG
GCAAAACTGTTTCTGGGTATTTATCCACTAATGAGTCACAAGAAAAACGAGTGGATTTGG
TAAGCATTTTCTTTTTTTTCTTAAGTTAGACAACTTCCCATTATTGACAATGATTTCAAG
CAAACAAAAGACAATAAACCCGCCACTACAGTTCCTGAAACAGGTGAAATCTGTATTACA
GCCCTTCCACGTTGGGGAGCCTCACTCCTGGTGTGACAGTACGGCAGAGTATGAATTAAA
CAATTGGGGATGTAATCATTGAACTATTCTTAAATGTGTGAATTATTAGTGGAAAAGACC
CAGCTGTAATTAGACCTCCACTGTGTACTTAGCTGGAAGAACATGTTAATTCTGCAATAT
GTCTCTTGGTTAAACATTGCACAGTTCTTACCTCATTTCTGTAAATAAGGTTTTGTGAAT
CTGTTTTGTATTGTGAAAAATTCATAAGATAACATTGATATTTTGATTTGTAATATTTCT
AATTGGTAGATTTAATTGAAAAGTAAAATTAATTTATTTTTATATGTTCAGGGGAATTTT
AAAGAAAATCAGATGTTTTGTAGATAATTAAAAAAAAATCGGTGTGGTTTATTTTACTTA
TTTAACCCGCTGGTTGTTATTCTGTAACAATTTGTATAAATGGTAAATTTTGAATGTGTT
GTTATTTTACTTAGATGTAAAATTCCACATGTATTAAAGAAAATGTACAAAGTTTTTGTT
AATAAAATTTAATAATGTTTATAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-222, gnl|bosTau2|chr13 (11213610-11213828)
               

               
               1-222, gnl|Hg17|chr10 (22063947-22064171)
               

               
               1-222, gnl|Mm7|chr2 (18272837-18273039)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-222, gnl|bosTau2|chr13 (11213610-11213828)
               

               
               1-222, gnl|Hg17|chr10 (22063947-22064171)
               

               
               1-222, gnl|Mm7|chr2 (18272837-18273039)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

Help | Less info


               
               cte (0.58548)
               

               
               kid (0.518941)
               

               
               lin (0.291206)
               

               
               ova (0.258264)
               

               
               tra (0.246184)
               

               
               ecc (0.23007)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               eru (0.120048)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               kid (0.518941)
               

               
               lin (0.291206)
               

               
               ova (0.258264)
               

               
               tra (0.246184)
               

               
               ecc (0.23007)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               eru (0.120048)

	1-222, gnl\|bosTau2\|chr13 (11213610-11213828)
	1-222, gnl\|Hg17\|chr10 (22063947-22064171)
	1-222, gnl\|Mm7\|chr2 (18272837-18273039)

	cte (0.58548)
	kid (0.518941)
	lin (0.291206)
	ova (0.258264)
	tra (0.246184)
	ecc (0.23007)
	mgm (0.180343)
	sin (0.174948)
	cut (0.169924)
	fco (0.157208)
	lun (0.150489)
	bfe (0.149858)
	lnt (0.142308)
	csk (0.140746)
	ste (0.135208)
	lyg (0.133103)
	nmm (0.132802)
	ret (0.128733)
	bla (0.124347)
	eru (0.120048)