Ss1.1-Pig4-TMW8058B12.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGCACTTCCGCTTCTCTCCCAGCGAGAGAGACACGAGTGGCCAGGCCCAGCCGCAGCCG CAGCAGCAGCCGCCGCGGCGGCACGGAGCAGCCAGACACAAAGAGAGGGGCTGTTTGCGG GGTGGGGTGGGGGGTTCGCTATGTCGGATGACGATTCGAGGGCCAGCACCAGCTCCTCCT CATCTTCGTCCTCCAACCAGCAAACCGAGAAAGAAACAAACACCCCCAAGAAGAAGGAGA GTAAAGTCAGCATGAGCAAAAACTCCAAACTCCTCTCCACCAGCGCCAAGAGGATTCAGA AGGAATTGGCAGACATCACTTTAGACCCGCCTCCTAACTGCAGTGCTGGCCCCAAAGGCG ATAACATCTATGAATGGAGATCAACCATTCTAGGGCCTCCAGGGTCCGTGTATGAGGGTG GTGTATTCTTCCTTGATATCACTTTTACACCAGAGTATCCCTTCAAGCCTCCAAAGGTTA CATTTCGGACAAGAATCTATCACTGTAATATTAACAGTCAAGGAGTTATTTGCTTGGACA TATTGAAAGATAATTGGAGCCCAGCCCTCACCATCTCTAAAGTTCTTCTTTCTATCTGCT CACTTCTTACAGACTGTAATCCTGCCGACCCCTTGGTGGGAAGTATTGCCACTCAGTATA TGACCAACAGAGCAGAACATGACAGAATGGCCAGACAGTGGACCAAGAGATACGCTACAT AAATTGGGTTTTCACAATTCTTTACATTATTTGTCTGTCACAGAGAGCTGCTTATGATTT TGAAGGGGTGGGGGAGGGTGGGAGTTGGTAAAGAGTAGGGTATTTCTATAACAGATATTA TTCAGTTTTATTTCCTAAGATTTTGTTGTAACTTAAGGTATCTTGCTACAGTAGGCAGAA TTGGTAATAGCAACTTTTAAAACTGTCATTAGTTCTGCAATATTAGCTGAAATGCAATAC AGAGAATAGATATTTGGGTTCAGTTGCTTGTAGTCTGTAAATTTAAAAACAGCTTAATTT TTTACAGGTTACACACACAGGGCCATTTATGTAAAGTCCTTCAAGACTACACACGTTTTT GTTTAAAAAAAATTGGAATCTGTTTTCCCTTCTTGTAAGGGAACGTTGATATTTAACAGC TTTTAGAGACTGTCATCTCATATATAGAAAATGGACGTGTAACTCTAAGACACCACGTAG GAAATGAGTAGTTATATATTTTATTTTATATGCCAATCTACTTTATTGTGAAAAGGTAGA GGTTTGAATCAGGACCTGTAAAACCTGTAGTAAAATACCTTAAGCTGTTAACTGTAAGGC GTGGACTAGGAGTTGCCCAGTGGATTGGTTATATGTTGTGGACTACTTAAGTCTGCATTT GTTACTGTGCTAATAAACAATATTAAAACGAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGCACTTCCGCTTCTCTCCCAGCGAGAGAGACACGAGTGGCCAGGCCCAGCCGCAGCCG CAGCAGCAGCCGCCGCGGCGGCACGGAGCAGCCAGACACAAAGAGAGGGGCTGTTTGCGG GGTGGGGTGGGGGGTTCGCTATGTCGGATGACGATTCGAGGGCCAGCACCAGCTCCTCCT CATCTTCGTCCTCCAACCAGCAAACCGAGAAAGAAACAAACACCCCCAAGAAGAAGGAGA GTAAAGTCAGCATGAGCAAAAACTCCAAACTCCTCTCCACCAGCGCCAAGAGGATTCAGA AGGAATTGGCAGACATCACTTTAGACCCGCCTCCTAACTGCAGTGCTGGCCCCAAAGGCG ATAACATCTATGAATGGAGATCAACCATTCTAGGGCCTCCAGGGTCCGTGTATGAGGGTG GTGTATTCTTCCTTGATATCACTTTTACACCAGAGTATCCCTTCAAGCCTCCAAAGGTTA CATTTCGGACAAGAATCTATCACTGTAATATTAACAGTCAAGGAGTTATTTGCTTGGACA TATTGAAAGATAATTGGAGCCCAGCCCTCACCATCTCTAAAGTTCTTCTTTCTATCTGCT CACTTCTTACAGACTGTAATCCTGCCGACCCCTTGGTGGGAAGTATTGCCACTCAGTATA TGACCAACAGAGCAGAACATGACAGAATGGCCAGACAGTGGACCAAGAGATACGCTACAT AAATTGGGTTTTCACAATTCTTTACATTATTTGTCTGTCACAGAGAGCTGCTTATGATTT TGAAGGGGTGGGGGAGGGTGGGAGTTGGTAAAGAGTAGGGTATTTCTATAACAGATATTA TTCAGTTTTATTTCCTAAGATTTTGTTGTAACTTAAGGTATCTTGCTACAGTAGGCAGAA TTGGTAATAGCAACTTTTAAAACTGTCATTAGTTCTGCAATATTAGCTGAAATGCAATAC AGAGAATAGATATTTGGGTTCAGTTGCTTGTAGTCTGTAAATTTAAAAACAGCTTAATTT TTTACAGGTTACACACACAGGGCCATTTATGTAAAGTCCTTCAAGACTACACACGTTTTT GTTTAAAAAAAATTGGAATCTGTTTTCCCTTCTTGTAAGGGAACGTTGATATTTAACAGC TTTTAGAGACTGTCATCTCATATATAGAAAATGGACGTGTAACTCTAAGACACCACGTAG GAAATGAGTAGTTATATATTTTATTTTATATGCCAATCTACTTTATTGTGAAAAGGTAGA GGTTTGAATCAGGACCTGTAAAACCTGTAGTAAAATACCTTAAGCTGTTAACTGTAAGGC GTGGACTAGGAGTTGCCCAGTGGATTGGTTATATGTTGTGGACTACTTAAGTCTGCATTT GTTACTGTGCTAATAAACAATATTAAAACGAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 119-237, - strand, RNAz p=0.876421 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 119-237, - strand, RNAz p=0.876421 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 119-293, gnl|bosTau2|chr27 (31041314-31041140) | |
| 119-293, gnl|Hg17|chr3 (23823743-23823917) | |
| 119-293, gnl|Mm7|chr14 (16151165-16150991) | |
| 324-715, gnl|bosTau2|chr3 (16369190-16369581) | |
| 324-715, gnl|Hg17|chr20 (5221432-5221041) | |
| 324-715, gnl|Mm7|chr3 (135249551-135259577) | |
| 475-622, gnl|bosTau2|chr27 (30764726-30764579) | |
| 475-622, gnl|canFam2|chr23 (23219715-23219526) | |
| 475-622, gnl|danRer3|chr23 (35892249-35892085) | |
| 475-622, gnl|dasNov1|scaffold_32754 (43895-43705) | |
| 475-622, gnl|echTel1|scaffold_245963 (9298-9109) | |
| 475-622, gnl|fr1|chrUn (197653196-197653359) | |
| 475-622, gnl|galGal2|chr2 (36160130-36160309) | |
| 475-622, gnl|hg17|chr3 (23549025-23549219) | |
| 475-622, gnl|Hg17|chr3 (23549047-23549194) | |
| 475-622, gnl|loxAfr1|scaffold_52403 (7970-8143) | |
| 475-622, gnl|mm7|chr14 (16405033-16404845) | |
| 475-622, gnl|Mm7|chr14 (16405013-16404866) | |
| 475-622, gnl|monDom2|scaffold_7 (79371043-79371233) | |
| 475-622, gnl|oryCun1|scaffold_110536 (9249-9073) | |
| 475-622, gnl|panTro1|chr2 (24483617-24483811) | |
| 475-622, gnl|rheMac2|chr2 (165832864-165833058) | |
| 475-622, gnl|rn3|chr15 (8805837-8806026) | |
| 475-622, gnl|tetNig1|chrUn_random (134839863-134839702) | |
| 475-622, gnl|xenTro1|scaffold_43 (1255141-1255315) | |
| 731-932, gnl|bosTau2|chr19 (13743290-13743086) | |
| 731-932, gnl|Hg17|chr3 (23907120-23907313) | |
| 731-932, gnl|Mm7|chr14 (16103076-16102889) | |
| 1317-1426, gnl|bosTau2|chr17 (15185596-15185705) | |
| 1317-1426, gnl|Hg17|chr3 (23907705-23907808) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 119-293, gnl|bosTau2|chr27 (31041314-31041140) | |
| 119-293, gnl|Hg17|chr3 (23823743-23823917) | |
| 119-293, gnl|Mm7|chr14 (16151165-16150991) | |
| 324-715, gnl|bosTau2|chr3 (16369190-16369581) | |
| 324-715, gnl|Hg17|chr20 (5221432-5221041) | |
| 324-715, gnl|Mm7|chr3 (135249551-135259577) | |
| 475-622, gnl|bosTau2|chr27 (30764726-30764579) | |
| 475-622, gnl|canFam2|chr23 (23219715-23219526) | |
| 475-622, gnl|danRer3|chr23 (35892249-35892085) | |
| 475-622, gnl|dasNov1|scaffold_32754 (43895-43705) | |
| 475-622, gnl|echTel1|scaffold_245963 (9298-9109) | |
| 475-622, gnl|fr1|chrUn (197653196-197653359) | |
| 475-622, gnl|galGal2|chr2 (36160130-36160309) | |
| 475-622, gnl|hg17|chr3 (23549025-23549219) | |
| 475-622, gnl|Hg17|chr3 (23549047-23549194) | |
| 475-622, gnl|loxAfr1|scaffold_52403 (7970-8143) | |
| 475-622, gnl|mm7|chr14 (16405033-16404845) | |
| 475-622, gnl|Mm7|chr14 (16405013-16404866) | |
| 475-622, gnl|monDom2|scaffold_7 (79371043-79371233) | |
| 475-622, gnl|oryCun1|scaffold_110536 (9249-9073) | |
| 475-622, gnl|panTro1|chr2 (24483617-24483811) | |
| 475-622, gnl|rheMac2|chr2 (165832864-165833058) | |
| 475-622, gnl|rn3|chr15 (8805837-8806026) | |
| 475-622, gnl|tetNig1|chrUn_random (134839863-134839702) | |
| 475-622, gnl|xenTro1|scaffold_43 (1255141-1255315) | |
| 731-932, gnl|bosTau2|chr19 (13743290-13743086) | |
| 731-932, gnl|Hg17|chr3 (23907120-23907313) | |
| 731-932, gnl|Mm7|chr14 (16103076-16102889) | |
| 1317-1426, gnl|bosTau2|chr17 (15185596-15185705) | |
| 1317-1426, gnl|Hg17|chr3 (23907705-23907808) |
| Expressed library(ies): 42 entry(ies) | More info |
| Expressed library(ies): 42 entry(ies) | Help | Less info |
| cbr (5.50294) | |
| cbe (1.91388) | |
| tbr (0.770891) | |
| fat (0.737137) | |
| rec (0.519211) | |
| pro (0.512033) | |
| mgp (0.461361) | |
| spl (0.429553) | |
| tes (0.415628) | |
| elu (0.385356) | |
| pgl (0.35545) | |
| sin (0.349895) | |
| vin (0.332557) | |
| fco (0.314416) | |
| sme (0.305437) | |
| bfe (0.299715) | |
| ste (0.270416) | |
| kid (0.259471) | |
| thg (0.253582) | |
| ece (0.229305) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| nep (0.183925) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ute (0.132784) | |
| ova (0.129132) | |
| sug (0.127291) | |
| ese (0.126502) | |
| bla (0.124347) | |
| med (0.116252) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| ldo (0.0970026) |
| Expressed library(ies): 42 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (5.50294) | |
| cbe (1.91388) | |
| tbr (0.770891) | |
| fat (0.737137) | |
| rec (0.519211) | |
| pro (0.512033) | |
| mgp (0.461361) | |
| spl (0.429553) | |
| tes (0.415628) | |
| elu (0.385356) | |
| pgl (0.35545) | |
| sin (0.349895) | |
| vin (0.332557) | |
| fco (0.314416) | |
| sme (0.305437) | |
| bfe (0.299715) | |
| ste (0.270416) | |
| kid (0.259471) | |
| thg (0.253582) | |
| ece (0.229305) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| nep (0.183925) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ute (0.132784) | |
| ova (0.129132) | |
| sug (0.127291) | |
| ese (0.126502) | |
| bla (0.124347) | |
| med (0.116252) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| ldo (0.0970026) |